diff --git a/NEWS.md b/NEWS.md index 6f01aa1..73e6707 100644 --- a/NEWS.md +++ b/NEWS.md @@ -3,10 +3,24 @@ taxizedb 0.2.0 ## NEW FEATURES - * support for the NCBI taxonomy database added - * gains ports of `taxize` functions to `taxizedb` (NCBI & ITIS supported): `children`, `classification`, `downstream`. beware when both `taxize` and `taxizedb` loaded in the same R session to namespace calls to these three functions. - * gains mapping functions: `name2taxid` (scientific or common name to taxonomy ID); `taxid2name` (taxonomy ID to scientific name); `taxid2rank` (taxonomy ID to rank) - * +* gains 3 new data sources: NCBI taxonomy, World Flora Online, Wikidata (#18) (#49) (#37) +* gains ports of `taxize` functions to `taxizedb` (NCBI & ITIS supported): `children`, `classification`, `downstream`. beware when both `taxize` and `taxizedb` loaded in the same R session to namespace calls to these three functions (#19) (#25) (#44) (#48) +* gains mapping functions: `name2taxid` (scientific or common name to taxonomy ID); `taxid2name` (taxonomy ID to scientific name); `taxid2rank` (taxonomy ID to rank) (#41) (#42) +* intro vignette added (#17) +* GBIF and COL data sources are not updated daily in the repos https://github.com/ropenscilabs/gbif-backbone-sql and https://github.com/ropenscilabs/col-sql/ via GithHub Actions. See those repos for details (#26) +* update package level manual file (`?taxizedb-package`) with details on each data source, their update schedules, and examples +* all data sources now use SQLite as the database storage engine. passwords/ports/usernames/etc are no longer needed! note that some `db_download*` functions download already created SQLite databases, whereas for other data sources the database is built locally on your machine from other data formats downloaded (see also #36, #46) +* a copy of the taxonomic ranks information from taxize package was ported over for internal use to be able to make `downstream()` work for most data sources + +## MINOR IMPROVEMENTS + +* remove check for whether SQLite is installed (#5 #29) +* all `src_*` functions now only have two paramters: `path` and `...`. where path by default figures out the path for you using the function `db_path()`, and `...` allows the user to pass on parameters to `DBI::dbConnect` + +## DEFUNCT + +* `db_load()` is now defunct. Now just use `db_download*` then `src*` for your data source (see also #43) + taxizedb 0.1.4 ============== diff --git a/cran-comments.md b/cran-comments.md index b1ad79c..f2c163a 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -14,7 +14,7 @@ There are no reverse dependencies. --- -This version xxxx. +This version fixes many bugs and adds additional data sources. Thanks! Scott Chamberlain