Dockerfile

FROM nvidia/cuda:11.7.1-devel-ubuntu20.04

WORKDIR /app
COPY . .

RUN echo 'debconf debconf/frontend select Noninteractive' | debconf-set-selections && \
    apt-get update -y && apt-get install -y dialog apt-utils && \
    apt-get install -y  \
        build-essential \
        wget \
        git \
        mesa-utils \
        libgl1-mesa-glx \
        libglib2.0-0 \
        libfontconfig1 \
        libxrender1 \
        libdbus-1-3 \
        libxkbcommon-x11-0 \
        libxi6 \
        libxcb-icccm4 \
        libxcb-image0 \
        libxcb-keysyms1 \
        libxcb-randr0 \
        libxcb-render-util0 \
        libxcb-xinerama0 \
        libxcb-xinput0 \
        libxcb-xfixes0 \
        libxcb-shape0 \
        && apt-get clean

# Install miniconda
ENV PATH="/usr/local/miniconda3/bin:${PATH}"
ARG PATH="/usr/local/miniconda3/bin:${PATH}"
RUN wget \
    https://repo.anaconda.com/miniconda/Miniconda3-py38_22.11.1-1-Linux-x86_64.sh -O Miniconda3.sh \
    && bash Miniconda3.sh -b -p /usr/local/miniconda3 \
    && rm -f Miniconda3.sh
SHELL ["conda", "run", "-n", "base", "/bin/bash", "-c"]

RUN pip install --no-cache-dir -r requirements.txt

RUN python ./survos2/improc/setup.py build_ext --inplace

RUN mkdir survos2_workbench && sed -i 's|/tmp|/app/survos2_workbench|g' settings.yaml && pip install -e .

ENTRYPOINT ["napari"]

RUN apt-get install -y wget gnupg2 apt-transport-https && \
    wget -O - https://xpra.org/gpg.asc | apt-key add - && \
    echo "deb https://xpra.org/ focal main" > /etc/apt/sources.list.d/xpra.list

RUN apt-get update -y && \
    apt-get install -y \
        xpra \
        xvfb \
        xterm \
        sshfs && \
    apt-get clean && \
    rm -rf /var/lib/apt/lists/*

ENV DISPLAY=:100
ENV XPRA_PORT=9876
ENV XPRA_START="python3 -m napari"
ENV XPRA_EXIT_WITH_CLIENT="yes"
ENV XPRA_XVFB_SCREEN="1920x1080x24+32"
EXPOSE 9876

CMD echo "Launching napari on Xpra. Connect via http://localhost:$XPRA_PORT"; \
    xpra start \
    --bind-tcp=0.0.0.0:$XPRA_PORT \
    --html=on \
    --start="$XPRA_START" \
    --exit-with-client="$XPRA_EXIT_WITH_CLIENT" \
    --daemon=no \
    --xvfb="/usr/bin/Xvfb +extension Composite -screen 0 $XPRA_XVFB_SCREEN -nolisten tcp -noreset" \
    --pulseaudio=no \
    --notifications=no \
    --bell=no \
    $DISPLAY

ENTRYPOINT []