-
Notifications
You must be signed in to change notification settings - Fork 1
/
Metadata_new.txt
13 lines (13 loc) · 5.78 KB
/
Metadata_new.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
all_Stand Sconfocal_Stand Pconfocal_Stand Mphoton_Stand Zstack_multiPoint_timeLapse_Stand emissionWheel_Stand WF_nolaser_Illumination WF_laser_Illumination Sconfocal_laser_Illumination Sconfocal_LED_Illumination Pconfocal_Illumination Mphoton_Illumination All_Wave WF_filterCube_Wave all_Optics mag_Optics transmitted_Optics WF_Detection Sconfocal_Detection Pconfocal_Detection Mphoton_Detection all_Software multiDim_Software multiColor_Software Z_stack_Software timeLapse_Software tile_Software all_Sample live_Sample fixed_Sample FP_Sample dye_Sample transfect_Sample core_Ack
Microscope Stand manufacturer and Model Scan unit Manufacturer and Model Scan unit Manufacturer and Model Scan unit Manufacturer and Model Illumination Shutter Manufacturer and Model Excitation/Emission filter wheel Manufacturer and Model Light source manufacturer and model Laser launch/combiner manufacturer and model Laser launch/combiner manufacturer and model Light source manufacturer and model Laser launch/combiner manufacturer and model Laser launch/combiner manufacturer and model Filter manufacturer and product number Filter cube(s) manufacturer and product number(s) Objective manufacturer Optovar or relay lens magnification Contrast enhancing technique or brightfield Camera manufacturer and model Camera manufacturer and model Detector type "Detector type (PMT, HyD, NDD)" "Software manufacturer, name, and version" Order of experimental acquisition "Sequential, simultaneous, or triggered channel/color acquisition" Zstack focusing device Time interval Stitching algoritm "Sample holder type, manufacturer and product number" "Imaging medium name, manufacturer and product number" "Detail protocol: fixitive, concentration of fixitive, fixation conditions (buffers, time, temperature), blocking, binding and hybridization buffer composition, Ab manufacturer, lot number, concentration, probe concentration, binding or hybridization conditions (time, temperature, sequential/simultaneous) " Specific fluorescent protein variant "Organic dye name, manufacturer and product number" "Transfection reagent, concentration or other method of expression" Acknowledge the core facilities that facilitated your research
***Type Pinhole size Scanning mechanism (galvo vs resonant) Scanning mechanism (galvo vs resonant) ***Illumination Shutter speed Excitation/Emission filter wheel Location in the Lightpath Light source type Laser line/wavelength Laser line/wavelength LED wavelength Tunable laser? Tunable? "Filter center wavelength and bandwidth (FWHM), cut on or cut off wavelength" Objective correction Condenser NA Camera type Camera type Cathode type "Cathode type (multi-alkali, GaASP)" "If custom, Author and appropiate citation" If custom macro: cite or make available. Zstack range and step size Coverslip grade Additional Components/additives to the imaging medium "Mounting/imaging medium name, manufacturer and product number" Organic dye concentration and solvent "***Check if specific equipment grants that funded the core facilities also need to be acknowledged (e.g., S10 Shared equipment grants)"
"***Commercial/commercial modified, custom modified" ***Pinhole spacing Scan directionality Scan directionality Stage Manufacturer and Model ***Excitation/Emission filter wheel filter change speed ***Light source power output Laser type Laser type ***Light source power output "Pulsed? If yes, pulse length " "Pulsed? If yes, pulse length " Filter coating method Objective magnification ***Additional optics ***Pixel size ***Pixel size Voltage "Voltage (Master Gain, HV, Gain)" ***Specific aquisition Modules/Macros/apps "Coverslip coating (type, concentration, detailed protocol)" Environmental chamber manufacturer and model ***Mounting/imaging medium RI if not specified and curing time.
***Upright or inverted ***Number of disks Scan rate or pixel dwell Scan rate or pixel dwell Linear encoded stage? Laser modulation Laser modulation Laser line/wavelength Laser line/wavelength ***Additional filters manufacturer and model Objective numerical aperture ***Chip size ***Chip size Offset Offset State of the shutter during acquisition Temperature and control device
***Disk speed Averaging or sum integration number Averaging or sum integration number ***Stage precision and speed ***Laser power output ***Laser power output "Laser type (Argon, solid state)" Laser type "***If tunable wavelength selection, range of wavelengths detected" Specified immersion medium Binning Binning Digital gain Digital gain Gas concentration and control method
***Scan area ***Scan area Focusing device manufacterer and model Laser modulation Laser modulation ***Objective application Bit Depth and associated gain Bit Depth and associated gain ***Photon counting mode ***Photon counting mode Humidity conditions and control method
***Scan or frame size ***Scan or frame size Focusing device type Laser intensity or % transmission Dispersion compensation? ***Immersion medium manufacturer and product number (if used) EM gain (if EMCCD used) EM gain (if EMCCD used) "If perfusion: perfusion conditions, hardware used "
Actual pixel or voxel size Actual pixel or voxel size ***Focusing device range ***Laser power output ***Pixel readout rate ***Pixel readout rate
Pinhole diameter Pinhole diameter if used ***Focusing device speed ***Dynamic range ***Dynamic range
***Focusing device precision ***Readout noise ***Readout noise
Hardware-based Focus maintenance device manufacturer and model "***If sCMOS, rolling or global shutter" "***If sCMOS, rolling or global shutter"
"Software based focusing maintenance set up (wavelength, range, step size, algorithm)"