fix: in bam record buffer, change the start of the window to the firs… #826
johanneskoesterAnnotations
73 warnings
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Formatting
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Formatting
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Formatting
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Formatting
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Formatting
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Testing-Features (no-default-features)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions-rs/toolchain@v1.0.6, Swatinem/rust-cache@v1.3.0, actions-rs/cargo@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Testing-Features (no-default-features)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions-rs/toolchain@v1.0.6, Swatinem/rust-cache@v1.3.0, actions-rs/cargo@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Testing-Features (no-default-features)
`/home/runner/work/rust-htslib/rust-htslib/.cargo/config` is deprecated in favor of `config.toml`
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Testing-Features (no-default-features):
src/bam/mod.rs#L1395
unnecessary parentheses around function argument
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Testing-Features (no-default-features):
src/bcf/record.rs#L134
field `buffer` is never read
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Testing-Features (no-default-features):
src/tbx/mod.rs#L94
field `hts_format` is never read
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Testing-Features (no-default-features):
src/bam/record.rs#L129
the type `hts_sys::bam1_t` does not permit being left uninitialized
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Testing-Features (no-default-features)
`rust-htslib` (lib) generated 4 warnings (run `cargo fix --lib -p rust-htslib` to apply 1 suggestion)
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Testing-Features (no-default-features):
src/bam/mod.rs#L1395
unnecessary parentheses around function argument
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Testing-Features (no-default-features)
1 warning emitted
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Testing-Features (no-default-features)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing-Features (no-default-features)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing-Features (no-default-features)
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Testing-Features (no-default-features)
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Testing-Features (no-default-features)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing-Features (no-default-features)
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Linting
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions-rs/toolchain@v1.0.6, actions-rs/clippy-check@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Linting
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions-rs/toolchain@v1.0.6, actions-rs/clippy-check@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Linting
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Linting
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Linting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions-rs/toolchain@v1.0.6, actions-rs/cargo@v1.0.1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions-rs/toolchain@v1.0.6, actions-rs/cargo@v1.0.1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Testing-MacOS (intel-ventura)
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Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions-rs/toolchain@v1.0.6, actions-rs/cargo@v1.0.1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Testing-MacOS (intel-monterey)
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Testing-MacOS (intel-monterey)
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Testing-MacOS (intel-monterey)
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Testing-Features (all-features)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions-rs/toolchain@v1.0.6, Swatinem/rust-cache@v1.3.0, actions-rs/cargo@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Testing-Features (all-features)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions-rs/toolchain@v1.0.6, Swatinem/rust-cache@v1.3.0, actions-rs/cargo@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Testing-Features (all-features)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing-Features (all-features)
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Testing-Features (all-features)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing-Features (all-features)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing-Features (all-features)
`/home/runner/work/rust-htslib/rust-htslib/.cargo/config` is deprecated in favor of `config.toml`
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Testing-Features (all-features):
src/bam/mod.rs#L1395
unnecessary parentheses around function argument
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Testing-Features (all-features):
src/bcf/record.rs#L134
field `buffer` is never read
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Testing-Features (all-features):
src/tbx/mod.rs#L94
field `hts_format` is never read
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Testing-Features (all-features):
src/bam/record.rs#L129
the type `hts_sys::bam1_t` does not permit being left uninitialized
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Testing-Features (all-features)
`rust-htslib` (lib) generated 4 warnings (run `cargo fix --lib -p rust-htslib` to apply 1 suggestion)
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Testing-Features (all-features):
src/bam/mod.rs#L1395
unnecessary parentheses around function argument
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Testing-Features (all-features)
1 warning emitted
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Testing-Features (all-features)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing-Features (all-features)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing-Features (all-features)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions-rs/toolchain@v1.0.6, Swatinem/rust-cache@v1.3.0, actions-rs/tarpaulin@v0.1, coverallsapp/github-action@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Testing
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions-rs/toolchain@v1.0.6, Swatinem/rust-cache@v1.3.0, actions-rs/tarpaulin@v0.1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Testing
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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