diff --git a/src/LocARNA/aligner.cc b/src/LocARNA/aligner.cc index e13cc11f..2fe32c16 100644 --- a/src/LocARNA/aligner.cc +++ b/src/LocARNA/aligner.cc @@ -1445,7 +1445,7 @@ namespace LocARNA { // write structure and ?. TODO: check and // reimplement. SW - 2013 Jun 7 if (opt_pos_output) { - std::cout << "HIT " << task_score + std::cout << "HIT " << task_score << " " << alignment.start_positions().first << " " << alignment.start_positions().first << " " << alignment.end_positions().second << " "