Remove one extra line after CLUSTAL header (which used to be written …

…by mlocarna)
s-will · May 4, 2018 · f4a8ffe · f4a8ffe
1 parent c9e4a9f
commit f4a8ffe
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Showing 9 changed files with 1 addition and 10 deletions.
diff --git a/src/Tests/mlocarna-archaea-alifold.testresult b/src/Tests/mlocarna-archaea-alifold.testresult
@@ -1,7 +1,6 @@
 CLUSTAL W --- LocARNA 2.0.0RC1
 
 
-
 vhuU               AG-CUCACAACCGAACCCAUU-------------UGGGAGGUUGUGAGCU-
 fwdB               AU-GUUGGAGGGGAACCCGUA-------------AGGGACCCUCCAAGAU-
 selD               UUACGAUGUGCCGAACCCUUU------------AAGGGAGGCACAUCGAAA

diff --git a/src/Tests/mlocarna-bed-anchors.testresult b/src/Tests/mlocarna-bed-anchors.testresult
@@ -1,7 +1,6 @@
 CLUSTAL W --- LocARNA 2.0.0RC1
 
 
-
 ACA7               ACCUCCUG--GGAUCGCAUCUGG-AGAGUGC---CUAGUAUUCUGCCAGCUUCGGAA-AGGGAGGGAAAGCAAGC-CUGGCAGAGGCACCCAUUCCAUUCCCAGCUUGCUCCGUAGCUGG
 ACA30              UGGCACUU--UCACAG--UUCCU-UCCCCAG---GCAGUGGGGCCAGGAUUUGGUAGCUGGUGCUGAGAGAAA-----ACCCUUG--AUUGUAUUCUUGCCCUGGG---AUUAUACCAGU
 ACA5               UGCAGCCG--UGUCAAAUUCAGUACCUGUCCUAUGCAUGGUAGGCACUGGCCCAGAA--GGCUGCCACAGAAACA-C--UGUGACUCAUGG-----GCCCUGUUCCUGUGUCCCAGGCUC

diff --git a/src/Tests/mlocarna-haca-constraints.testresult b/src/Tests/mlocarna-haca-constraints.testresult
@@ -1,7 +1,6 @@
 CLUSTAL W --- LocARNA 2.0.0RC1
 
 
-
 ACA7               ACCUCCUG--GGAUCGCAUCUGG-AGAG-UG--CCUAGUAUUCUGCCAGCUUCGGAA-AGGGAGGGAAAGCAAGCCUGGCAGAG-GCACCCAUUCCAUUCCCAGCUUGCUCCGUA-----
 ACA30              UGGCACUU--UCACAG--UUCCU-UCCC-CA--GGCAGUGGGGCCAGGAUUUGGUAGCUGGUGCUGAGAGAAAACCC----UUG---AUUGUAUUCUUGCCCUGGG---AUUAUA-----
 ACA5               UGCAGCCG--UGUCAAAUUCAGUACCUGUCCUAUGCAUGGUAGGCACUGGCCCAGAA--GGCUGCCACAGAAA--CACUGUGAC-UCAUGGGCCCUGUUCCUGUGU--------------

diff --git a/src/Tests/mlocarna-probabilistic-ext.testresult b/src/Tests/mlocarna-probabilistic-ext.testresult
@@ -1,7 +1,6 @@
 CLUSTAL W --- LocARNA 2.0.0RC1
 
 
-
 fdhA               CGC-CACCCUGCGAACCCAAUAUAAAAUAAUACAAGGGAGCAG-GUGGCG-
 hdrA               GGC-ACC-ACUCGAAGGCU--------------AAGCCAAAGU-GGUGCU-
 vhuD               GUU-CUC-UCGGGAACCCGU------------CAAGGGACCGA-GAGAAC-

diff --git a/src/Tests/mlocarna-probabilistic.testresult b/src/Tests/mlocarna-probabilistic.testresult
@@ -1,7 +1,6 @@
 CLUSTAL W --- LocARNA 2.0.0RC1
 
 
-
 fdhA               CGC-CACCCUGCGAACCCAAUAUAAAAUAAUACAAGGGAGCAG-GUGGCG-
 hdrA               GGC-ACC-ACUCGAAGGCU--------------AAGCCAAAGU-GGUGCU-
 vhuD               GUU-CUC-UCGGGAACCCGU------------CAAGGGACCGA-GAGAAC-

diff --git a/src/Tests/mlocarna-realign.testresult b/src/Tests/mlocarna-realign.testresult
@@ -1,7 +1,6 @@
 CLUSTAL W --- LocARNA 2.0.0RC1
 
 
-
 vhuU               AGCUCACAACCGAACCCAUU-------------UGGGAGGUUGUGAGCU
 fdhA               CGCCACCCUGCGAACCCAAUAUAAAAUAAUACAAGGGAGCAG-GUGGCG
 fruA               --CCUCGAGGGGAACCCGA-------------AAGGGACCCGAGAGG--

diff --git a/src/Tests/mlocarna-sparse.testresult b/src/Tests/mlocarna-sparse.testresult
@@ -1,7 +1,6 @@
 CLUSTAL W --- LocARNA 2.0.0RC2
 
 
-
 vhuU               AG-CUCAC-AACCGAACCC------------AU-UUGGGAGGU-UGUGAGCU-
 hdrA               GG-CAC-C-ACUCGAAGGC-------------U-AAGCCAAAG-UG-GUGCU-
 vhuD               GU-UCU-C-UCGGGAACCC------------GUCAAGGGACCG-AG-AGAAC-

diff --git a/src/Tests/mlocarna-threads.testresult b/src/Tests/mlocarna-threads.testresult
@@ -1,7 +1,6 @@
 CLUSTAL W --- LocARNA 2.0.0RC1
 
 
-
 X58295.1_1384-1453       UGGCGUCU-UCAUGAGGGAGGGGCCCAAAGCC----CUUGUGGGCGGACCUCCCCUGAGCCUGUCUGAGGGGCCA
 D25220.1_1493-1556       CU-UGCGU-UAAUGAGAACAGAAACGAAAACUAUAA-C-CU-AGGGGUUUCUGUUGGAU---GGUU-GGCAAC--
 AY060611.1_560-627       GU-GGCGC-UUAUGACGCAGUUGUCUUAAACUCGAA-CUCG-AGCGGGCAAUUGCUGAUUACGAUU-AACCAC--

diff --git a/src/Utils/mlocarna b/src/Utils/mlocarna
@@ -874,9 +874,8 @@ if ($THREADS_ENABLED) {
 ## ------------------------------------------------------------
 ## global constants
 
-
 $MLocarna::PACKAGE_STRING=readpipe "$bindir/locarna --version";
-
+chomp $MLocarna::PACKAGE_STRING;
 
 ## vienna package programs
 my $RNAfold = "RNAfold";