Releases: s-will/LocARNA
LocARNA 2.0.1 (Maintenance update)
LocARNA 2.0.0
Version 2 of LocARNA introduces several improvements that make LocARNA faster and easier to use. Most prominently, it features a novel sequence envelope heuristic in all major alignment modes, which significantly improves over less sophisticated banding heuristics (in terms of speed, robustness, /and/ flexibility). Most directly notable for users, it changes the default parameters to more appropriate settings. In addition to various detailed improvements of the LocARNA tools, there are significant changes under the hood: the C++-code of the LocARNA library was simplified and modernized making use of C++-14 features. These changes make the library easier to use, maintain and extend.
2.0.0RC10
The 2.x series of LocARNA introduces several improvements that make LocARNA faster and easier to use. Most prominently, it features a novel sequence envelope heuristic in all major alignment modes, which significantly improves over less sophisticated banding heuristics (in terms of speed, robustness, /and/ flexibility). Most directly notable for users, it changes the default parameters to more appropriate settings. In addition too various detailed improvements of the locarna tools, there are significant changes under the hood: the C++-code of the LocARNA library was simplified and modernized making use of C++-14 features. These changes make the library easier to use, maintain and extend.
v1.9.2.3
The 1.9.x series of LocARNA. Currently, the latest official releases belong to this series, which was still maintained for a long time in parallel to developing the upcoming 2.x series.
In most cases, it is now recommended to use the 2.x release. There may be legacy reasons to stick with the older and officially released version, e.g. different default parametrization and otherwise slightly changed behavior of the 2.x versions.
v2.0.0RC8
The 2.x series of LocARNA introduces several improvements that make LocARNA faster and easier to use. Most prominently, it features a novel sequence envelope heuristic in all major alignment modes, which significantly improves over less sophisticated banding heuristics (in terms of speed, robustness, /and/ flexibility). Most directly notable for users, it changes the default parameters to more appropriate settings. In addition too various detailed improvements of the locarna tools, there are significant changes under the hood: the C++-code of the LocARNA library was simplified and modernized making use of C++-14 features. These changes make the library easier to use, maintain and extend.
v2.0.0RC7
v1.9.2.2
v1.9.2.1
v2.0.0RC6: Adjust behavior of locarna and mlocarna for pairwise alignments
-- do not use alifold in binaries when calculating base pairs
for single sequences
-- use noLP in mlocarna for calculating base pair probabilties
/and/ the alignment
-- increase output precision for probabilities in pp files
(reducing rounding issues for the typical cutoff)