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.gitignore
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# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class
# C extensions
*.so
# Distribution / packaging
wandb/
cache/
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST
# PyInstaller
# Usually these files are written by a python script from a template
# before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec
# Installer logs
pip-log.txt
pip-delete-this-directory.txt
# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
*.py,cover
.hypothesis/
.pytest_cache/
cover/
# Translations
*.mo
*.pot
# Django stuff:
*.log
local_settings.py
db.sqlite3
db.sqlite3-journal
# Flask stuff:
instance/
.webassets-cache
# Scrapy stuff:
.scrapy
# Sphinx documentation
docs/_build/
# PyBuilder
.pybuilder/
target/
# Jupyter Notebook
.ipynb_checkpoints
# IPython
profile_default/
ipython_config.py
# pyenv
# For a library or package, you might want to ignore these files since the code is
# intended to run in multiple environments; otherwise, check them in:
# .python-version
# pipenv
# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
# However, in case of collaboration, if having platform-specific dependencies or dependencies
# having no cross-platform support, pipenv may install dependencies that don't work, or not
# install all needed dependencies.
#Pipfile.lock
# PEP 582; used by e.g. github.com/David-OConnor/pyflow
__pypackages__/
# Celery stuff
celerybeat-schedule
celerybeat.pid
# SageMath parsed files
*.sage.py
# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/
# Spyder project settings
.spyderproject
.spyproject
# Rope project settings
.ropeproject
# mkdocs documentation
/site
# mypy
.mypy_cache/
.dmypy.json
dmypy.json
# Pyre type checker
.pyre/
# pytype static type analyzer
.pytype/
# Cython debug symbols
cython_debug/
# logs created by scripts
logs/
# ignore large data folders
data/
# sketches
sketches/
sketches/*
# .DS_Store
.DS_Store
../.DS_Store
plots/
bin/jobs
bin/checkpoints
bin/data
bin/datasets
data/models
data/
models/
bin/processed/
raw/
logs
results/
bin041122/CODETESTING.py
bin041122/custom_tools.py
bin041122/data_preparation.py
bin041122/data_processing.py
bin041122/dataset.py
bin041122/evaluation_metrics.py
bin041122/explain_driver.py
bin041122/explainer_base.py
bin041122/explainer_cli.py
bin041122/explainer.py
bin041122/generate_jobs.py
bin041122/largest_connected_component.py
bin041122/model.py
bin041122/plotting.py
bin041122/train_test_controller.py
bin041122/trainer_tester.py
bin041122/checkpoints/ba_lrp/GCN_2l/0/GCN_2l_best.ckpt
bin041122/checkpoints/ba_lrp/GCN_3l/0/GCN_3l_best.ckpt
bin041122/checkpoints/ba_lrp/GIN_3l/0/GIN_3l_best.ckpt
bin041122/checkpoints/ba_shapes/GCN_2l/0/GCN_2l_best.ckpt
bin041122/checkpoints/ba_shapes/GIN_2l/0/GIN_2l_best.ckpt
bin041122/checkpoints/clintox/GCN_3l/0/GCN_3l_best.ckpt
bin041122/checkpoints/clintox/GIN_3l/0/GIN_3l_best.ckpt
bin041122/checkpoints/tox21/GCN_3l/2/GCN_3l_best.ckpt
bin041122/checkpoints/tox21/GIN_3l/2/GIN_3l_best.ckpt
bin041122/datasets/clintox/processed/data.pt
bin041122/datasets/clintox/processed/pre_filter.pt
bin041122/datasets/clintox/processed/pre_transform.pt
bin041122/explain/evaluate_explainer_feature_noise.py
bin041122/explain/explainer_base.py
bin041122/explain/explainer.py
bin041122/final_version_explainer/evaluate_explainer_feature_noise2.py
bin041122/jobs/GAT_Training/1_1000.sh
bin041122/jobs/GAT_Training/2_1000.sh
bin041122/jobs/GAT_Training/3_1000.sh
bin041122/jobs/GAT_Training/4_1000.sh
bin041122/jobs/GAT_Training/5_1000.sh
bin041122/jobs/GAT_Training/6_1000.sh
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bin041122/jobs/GAT_Training/8_1000.sh
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bin041122/jobs/GAT_Training/11_1000.sh
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bin041122/jobs/GAT_Training/14_1000.sh
bin041122/jobs/GAT_Training/15_1000.sh
bin041122/jobs/GAT_Training/16_1000.sh
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bin041122/jobs/GAT_Training/all_runs.sh
bin041122/jobs/GAT_Training/core.4134
bin041122/jobs/GAT_Training/core.121967
bin041122/jobs/GCN_PNA_Training/1_1000.sh
bin041122/jobs/GCN_PNA_Training/2_1000.sh
bin041122/jobs/GCN_PNA_Training/3_1000.sh
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bin041122/jobs/GCN_PNA_Training/13_1000.sh
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bin041122/jobs/PNA_training_12-10-2022/all_runs.sh
bin041122/legacy_code/dig_test.py
bin041122/legacy_code/evaluate_expaliner.py
bin041122/legacy_code/evaluate_explainer_feature_noise.py
bin041122/legacy_code/explain.py
bin041122/legacy_code/explainer_base.py
bin041122/legacy_code/explainer_base2.py
bin041122/legacy_code/gnnexplainer.py
bin041122/legacy_code/lime.py
bin041122/legacy_code/lrp_filter.py
bin041122/legacy_code/lrp_layers.py
bin041122/legacy_code/lrp_utils.py
bin041122/legacy_code/lrp.py
bin041122/legacy_code/mlp_gru_layer.py
bin041122/legacy_code/mnist_draw.py
bin041122/legacy_code/mnist_graclus.py
bin041122/legacy_code/model.py
bin041122/legacy_code/playground.py
bin041122/legacy_code/pna_model.py
bin041122/legacy_code/saliency.py
bin041122/legacy_code/shap.py
bin041122/legacy_code/svx_explainers_base.py
bin041122/legacy_code/svx_plots.py
bin041122/legacy_code/svxexplainer.py
bin041122/legacy_code/test
bin041122/legacy_code/test_data_preparation.py
bin041122/legacy_code/test.py
bin041122/legacy_code/train_ignite.py
bin041122/legacy_code/train_test_fornow.py
bin041122/legacy_code/train_test_functions.py
bin041122/legacy_code/train_test_mnist.py
bin041122/legacy_code/train_test_nestedfold.py
bin041122/legacy_code/train_test.py
bin041122/legacy_code/train.py
bin041122/legacy_code/training_noisy_data.py
bin041122/processed/pre_filter.pt
bin041122/processed/pre_transform.pt
bin041122/processed/test_data.pt
bin041122/processed/train_data.pt
bin/checkpoint.pt
docker.commands