I thought OmnipathR already accepts organism names saezlab/CollecTRI@…

…707f0b8
saezlab · Oct 3, 2023 · f72c23b · f72c23b
1 parent 21d7b9a
commit f72c23b
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/R/omnipath.R b/R/omnipath.R
@@ -384,6 +384,9 @@ omnipath_check_param <- function(param){
         param$fields
     )
 
+    # allow organism names
+    param$organisms %<>% map_int(ncbi_taxid)
+
     # removing some fields according to query type
     if(!param$query_type %in% c('interactions', 'enzsub')){
         param$genesymbols <- NULL