From d4373f6d38d7de9f88c83ad6f4f8f9b82df79ec1 Mon Sep 17 00:00:00 2001 From: Aurelien Dugourd Date: Mon, 15 Jul 2024 11:35:52 +0200 Subject: [PATCH] Update README.md --- README.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index bd57301..546606d 100644 --- a/README.md +++ b/README.md @@ -42,20 +42,20 @@ But 4.1 is advised in any case. ## tutorial to use MOFA nad COSMOS -[Here](https://saezlab.github.io/cosmosR/articles/MOFA_to_COSMOS.html) you can find an extensive tutorial showing how to use MOFA and COSMOS with the NCI60 dataset. This is an extensive tutorial, if you wish to get a quicker plug and play introduction to COSMOS, see below. +[Here](https://github.com/saezlab/Factor_COSMOS/) you can find an extensive tutorial showing how to use MOFA and COSMOS with the NCI60 dataset. This is an extensive tutorial, if you wish to get a quicker plug and play introduction to COSMOS, see below. !!! THIS is were you can find the input data and the pre-processing scripts that corespond to the featured vignette !!! ## Tutorial (NCI60 playground) We made a repository that contains pre-processed inputs and an example script to use cosmos with the NCI60 RNA+metabolomic datasets. -You can find the repository [here](https://saezlab.github.io/cosmosR/articles/NCI60_tutorial.html). +You can find the repository [here](https://github.com/saezlab/COSMOS_basic). !!! THIS is were you can find the input data and the pre-processing scripts that corespond to the featured vignette !!! ## Access -The meta PKN used with the biorXiv version of COSMOS is available [here](http://metapkn.omnipathdb.org/). +The meta PKN used with the older biorXiv version of COSMOS (2021) is available [here](http://metapkn.omnipathdb.org/). An updated meta PKN is available with the package (using data(meta_network) in R)