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1.4.0 #138

Merged
merged 13 commits into from
Sep 2, 2024
Merged

1.4.0 #138

merged 13 commits into from
Sep 2, 2024

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dbdimitrov
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@dbdimitrov dbdimitrov commented Sep 2, 2024

  • Now published at Nat Cell Bio.

  • Correctly referred to PK tutorial for orthology conversion

  • Added batch_key and min_var_nbatches to control te way batches are selected in li.multi.lrs_to_views.
    This might result in minor differences of how many interactions are considered per view, as I also changed the order of filtering.

  • Changed max_neighbours in li.ut.spatial_neighbors to be a fixed number (default=100), rather than a fraction of the spots as this was making RAM explode for large spatial formats.

@dbdimitrov dbdimitrov merged commit 058a768 into main Sep 2, 2024
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