Merge branch 'pr281'

saezlab · Feb 16, 2024 · 2e0bfed · 2e0bfed
2 parents fbff6cd + d07439a
commit 2e0bfed
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diff --git a/pypath/inputs/cellphonedb.py b/pypath/inputs/cellphonedb.py
@@ -264,6 +264,10 @@ def get_type(entity):
             'unknown'
         )
 
+    def get_bool(rec, attr):
+
+        return attr in rec and rec[attr].upper() == 'TRUE'
+
     CellphonedbInteraction = collections.namedtuple(
         'CellphonedbInteraction',
         [
@@ -274,6 +278,7 @@ def get_type(entity):
             'interaction_type',
             'type_a',
             'type_b',
+            'is_ppi',
         ]
     )
 
@@ -304,6 +309,7 @@ def get_type(entity):
             rec['partner_b'],
             complexes = complexes,
         )
+        _is_ppi = get_bool(rec, 'is_ppi')
 
         for partner_a, partner_b in itertools.product(_partner_a, _partner_b):
 
@@ -338,6 +344,7 @@ def get_type(entity):
                     interaction_type = '%s-%s' % (_type_a, _type_b),
                     type_a = _type_a,
                     type_b = _type_b,
+                    is_ppi = _is_ppi,
                 )
             )
 

diff --git a/pypath/resources/data_formats.py b/pypath/resources/data_formats.py
@@ -2945,6 +2945,7 @@ def _pathwaycommons_single_resource(resource, transcription = False):
         header = False,
         extra_edge_attrs = {
             'type': 4,
+            'is_ppi': 7,
         },
         extra_node_attrs_a = {
             'cellphonedb_type': 5,