ECM-related tests fail after an incremental build #37764
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This is because setting the default ECMBIN=ecm is only done when using the configure test, but not when skipping the configure test because the spkg is already installed. Steps to reproduce: * ecm is not installed in the base os * Sage make distclean && make succeeeds * Tests succeed * re-running ./bootstrap && ./configure && make works * Tests now fail with PermissionError: [Errno 13] Permission denied: '' See also: * sagemath#37701 * sagemath#37011 (comment)
mkoeppe
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Apr 7, 2024
mkoeppe
reviewed
Apr 7, 2024
Co-authored-by: Matthias Köppe <mkoeppe@math.ucdavis.edu>
Co-authored-by: Matthias Köppe <mkoeppe@math.ucdavis.edu>
mkoeppe
reviewed
Apr 7, 2024
Co-authored-by: Matthias Köppe <mkoeppe@math.ucdavis.edu>
mkoeppe
approved these changes
Apr 7, 2024
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jacksonwalters
added a commit
to jacksonwalters/sage
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Apr 9, 2024
commit 14a1e5c078d1684f751b9e7ef450f197e7bcf27f
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 23:01:35 2024 -0400
Update src/sage/combinat/symmetric_group_algebra.py
Good idea.
moved description from _dft_modular to dft docstring
remove doctest with p=3, n=3
Update src/sage/combinat/symmetric_group_algebra.py
Update src/sage/combinat/symmetric_group_algebra.py
Co-Authored-By: Travis Scrimshaw <clfrngrown@aol.com>
commit f3807cb141bae308906295f605939d4b2b205a5a
Merge: 9ad2152942 8ea5214695
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 20:12:53 2024 -0400
Merge branch 'develop' into pr/37748
commit 8ea5214695f742eccd34bd88600771b7121cdb9f
Author: Release Manager <release@sagemath.org>
Date: Tue Apr 9 00:29:19 2024 +0200
Updated SageMath version to 10.4.beta2
commit 9ad2152942819a55c20d80485ad8cd8925969c6c
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 13:38:43 2024 -0400
double backslash for math
commit 619a48dea00a0a67b8d4e542948200dc23e9589a
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 13:33:00 2024 -0400
add examples
commit 527ae2670dd3a37b25a192ab49dad7f4c16dd5aa
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 13:24:13 2024 -0400
form should default to None
if form is None, check if characteristic of field divides order of group. if so, it's the modular case, and we return the projection onto idempotents change-of-basis, i.e. the MFT. if not, use semi-normal form.
commit 488e931da94f4872047ff8e839edc4a0c99b163e
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 13:09:54 2024 -0400
missing parantheses
commit 7e96c904b6bc47d2108930c039b95a14155d425b
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 13:00:57 2024 -0400
Update src/sage/combinat/symmetric_group_algebra.py
Co-authored-by: Travis Scrimshaw <clfrngrown@aol.com>
commit cf27c64dff0b77c6cca162849ec923ae14f4920f
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 13:00:14 2024 -0400
Update src/sage/combinat/symmetric_group_algebra.py
I thought I could do this, don't know why I convinced myself I needed flatten.
Co-authored-by: Travis Scrimshaw <clfrngrown@aol.com>
commit 92699f42eba524047b09d527981dab2456802958
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 12:59:16 2024 -0400
Update src/sage/combinat/symmetric_group_algebra.py
Co-authored-by: Travis Scrimshaw <clfrngrown@aol.com>
commit 68f2ef140f91356f55290d100ad8a5282f19c206
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 12:58:30 2024 -0400
Update src/sage/combinat/symmetric_group_algebra.py
Co-authored-by: Travis Scrimshaw <clfrngrown@aol.com>
commit 618d5e1a8cb11006ef9fa6642e33f06d5728d6ae
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 12:57:18 2024 -0400
Update src/sage/combinat/symmetric_group_algebra.py
Co-authored-by: Travis Scrimshaw <clfrngrown@aol.com>
commit 04db911e3f6a08b3be1bf5c295e913a40ee8b28a
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 12:56:37 2024 -0400
Update src/sage/combinat/symmetric_group_algebra.py
I see, so "None" if the user doesn't specify, and we determine which form based on whether p|n!. Sounds good.
Co-authored-by: Travis Scrimshaw <clfrngrown@aol.com>
commit e86f79410ebda01b8a85598a5754f9c383336ae1
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 11:09:57 2024 -0400
add doctest to ensure issue 37751 is fixed
commit f8c64d16b3d1c7b3d338d9d2339ae2e284df3c58
Merge: aedd2f3927 3079e2d897
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 10:55:44 2024 -0400
Merge branch 'pr/37748' of https://github.com/jacksonwalters/sage into pr/37748
commit aedd2f3927aac05dceeb97bd484afa82557652a8
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 10:55:43 2024 -0400
remove multiplication stars
commit 3079e2d897396222b0f23784a4d07a40f25b3c1f
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 10:54:38 2024 -0400
Update src/sage/combinat/symmetric_group_algebra.py
Co-authored-by: grhkm21 <83517584+grhkm21@users.noreply.github.com>
commit b14565299a6f5a82e5fae5080de88b455ce696e5
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 10:51:59 2024 -0400
docstring lines are wrapped at 80 characters
ensure each line is less than 80 characters
commit e3fcc1f59c4668f88c184649c18627480365e646
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 10:24:51 2024 -0400
keep form argument
keep form since there is a one year deprecation warning before removing arguments. show deprecation warning when default seminormal form is called, but suggest modular form which works in all cases
commit 6d187b153b5b5c3e29fe07d9efe925e34bf5baa5
Merge: 551139c09f c8d260a6fe
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 23:34:58 2024 +0200
gh-37764: ECM-related tests fail after an incremental build
### TL;DR:
This is because setting the default ECMBIN=ecm is only done when using
the configure test, but not when skipping the configure test because the
spkg is already installed.
### Steps to reproduce:
* ecm is not installed in the base os
* Sage make distclean && make succeeeds
* Tests succeed
* re-running ./bootstrap && ./configure && make works
* Tests now fail with PermissionError: [Errno 13] Permission denied: ''
### Dependencies
See also:
* https://github.com/sagemath/sage/pull/37701
* https://github.com/sagemath/sage/pull/37011#issuecomment-2023089743
URL: https://github.com/sagemath/sage/pull/37764
Reported by: Volker Braun
Reviewer(s): Matthias Köppe
commit 71ad110e196d9f17934d030ce1c000e11b50fee8
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Sun Apr 7 19:57:42 2024 -0400
trigger GitHub actions
commit c8d260a6fe37cb0379690e57dab6fd2a3d5d8048
Author: Volker Braun <tarpit@vbraun.imap.cc>
Date: Sun Apr 7 22:13:11 2024 +0200
Update build/pkgs/ecm/spkg-configure.m4
Co-authored-by: Matthias Köppe <mkoeppe@math.ucdavis.edu>
commit fbf896681da3ad1fad6c164e4d5a7cf452ec2eec
Author: Volker Braun <tarpit@vbraun.imap.cc>
Date: Sun Apr 7 21:35:42 2024 +0200
Update build/pkgs/ecm/spkg-configure.m4
Co-authored-by: Matthias Köppe <mkoeppe@math.ucdavis.edu>
commit 6531f7e415230d62fecd0a38fd804081341a9f32
Author: Volker Braun <tarpit@vbraun.imap.cc>
Date: Sun Apr 7 21:35:38 2024 +0200
Update build/pkgs/ecm/spkg-configure.m4
Co-authored-by: Matthias Köppe <mkoeppe@math.ucdavis.edu>
commit af0e24286a62a06d85e1baf49d0dc8f624965e5c
Author: Volker Braun <vbraun.name@gmail.com>
Date: Sun Apr 7 19:17:37 2024 +0200
ECM-related tests fail after an incremental build
This is because setting the default ECMBIN=ecm is only done when using
the configure test, but not when skipping the configure test because
the spkg is already installed.
Steps to reproduce:
* ecm is not installed in the base os
* Sage make distclean && make succeeeds
* Tests succeed
* re-running ./bootstrap && ./configure && make works
* Tests now fail with PermissionError: [Errno 13] Permission denied: ''
See also:
* https://github.com/sagemath/sage/pull/37701
* https://github.com/sagemath/sage/pull/37011#issuecomment-2023089743
commit 551139c09f26a5da96b1187c3f0dd17b8d80ef84
Merge: 03be519274 547d502ed5
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:43 2024 +0200
gh-37763: Fix tolerance for scipy 1.13
After updating scipy to 1.13:
```
**********************************************************************
File "pkgs/sagemath-standard/build/lib.linux-x86_64-cpython-
312/sage/matrix/matrix_double_dense.pyx", line 3686, in
sage.matrix.matrix_double_dense.Matrix_double_dense.exp
Failed example:
A.exp() # tol 1.1e-14
# needs sage.symbolic
Expected:
[-19.614602953804912 + 12.517743846762578*I 3.7949636449582176 +
28.88379930658099*I]
[ -32.383580980922254 + 21.88423595789845*I 2.269633004093535 +
44.901324827684824*I]
Got:
[-19.61460295380496 + 12.517743846762578*I 3.7949636449581874 +
28.88379930658104*I]
[-32.38358098092232 + 21.884235957898436*I 2.2696330040934853 +
44.901324827684896*I]
Tolerance exceeded in 1 of 8:
2.269633004093535 vs 2.2696330040934853, tolerance 3e-14 > 1.1e-14
**********************************************************************
```
This PR raises the tolerance to `3e-14` to fix this.
### :memo: Checklist
- [x] The title is concise and informative.
- [x] The description explains in detail what this PR is about.
URL: https://github.com/sagemath/sage/pull/37763
Reported by: Gonzalo Tornaría
Reviewer(s): Antonio Rojas
commit 03be519274f1e3aa424ea729f406180a10df1498
Merge: 4d88e898e2 cd41d1e414
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:37 2024 +0200
gh-37755: src/sage/graphs/graph_decompositions/tdlib.pyx: Use -std=c++11
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This is needed with the current Xcode command line tools on macOS with
boost from homebrew.
Similar to
https://github.com/sagemath/sage/pull/37646#issuecomment-2017108199
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URL: https://github.com/sagemath/sage/pull/37755
Reported by: Matthias Köppe
Reviewer(s): David Coudert
commit 4d88e898e203d9b7297d224f40d659c213701ccb
Merge: 9971cec642 6722976389
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:34 2024 +0200
gh-37753: Added rank check to doctest in `.gauss_on_polys`
Fixes #37732. Also removed assignment of vectors `v` in the same doctest
since they are not used.
URL: https://github.com/sagemath/sage/pull/37753
Reported by: Sebastian A. Spindler
Reviewer(s): Martin Rubey
commit 9971cec64239679ee00ee7b22415b98ed53fbbf6
Merge: 3df3305a64 80239bc925
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:31 2024 +0200
gh-37736: Reimplementing the Witt (Sym Func) change of basis, caches, and omega involution
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description below. -->
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to calculate 1 + 2". -->
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example, "Fixes #12345". -->
We reimplement the coercion from the Witt basis of symmetric functions
to the $h$, $e$, and $p$ bases and their inverses by using the
generating function identities and recursion for $w_n, h_n, e_n, p_n$
and the mulitplicative basis property for the general shape (in
particular, we attempt to minimize the number of multiplications and
maximize the use of the cache by recursively splitting the partition by
its smallest part). We cache the result using `@cached_method` instead
of custom classes. We also deprecate the `coerce_*` inputs.
We also take advantage that $\omega w_n = w_n$ when $n$ is odd to
compute the omega involution. This extends to a faster computation of
the antipode.
### :memo: Checklist
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- [x] I have updated the documentation accordingly.
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URL: https://github.com/sagemath/sage/pull/37736
Reported by: Travis Scrimshaw
Reviewer(s): Darij Grinberg, Martin Rubey
commit 3df3305a6493f88ce86a1bc73e17c34ad01fbe33
Merge: 01333dfec1 ddcb3e45ca
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:27 2024 +0200
gh-37725: Fix typo/phrasing in README.md
<!-- ^ Please provide a concise and informative title. -->
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description below. -->
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example, "Fixes #12345". -->
- Removed the phrase "It assumes that you have already cloned the git
repository" from the setup guide since the guide actually contains
instructions on cloning the repository
- Removed a random misplaced period
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- [ ] I have updated the documentation accordingly.
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URL: https://github.com/sagemath/sage/pull/37725
Reported by: Faisal
Reviewer(s): gmou3
commit 01333dfec1ae7a518260c0178d4a0b254b886157
Merge: bcbb58f10a 8378fe6fdd
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:24 2024 +0200
gh-37721: Renamed "ring" argument of matrix contructor to "base_ring"
<!-- ^ Please provide a concise and informative title. -->
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description below. -->
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to calculate 1 + 2". -->
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The matrix constructor used to accept ``ring`` as argument to specify a
the base ring of a matrix.
It now takes ``base_ring`` instead. ``ring`` is still accepted but
deprecated (I added a deprecation in the code).
This is for unification (``base_ring`` is what users expect from their
experience with other classes).
This solves @mkoeppe's issue #33380.
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URL: https://github.com/sagemath/sage/pull/37721
Reported by: SandwichGouda
Reviewer(s): Matthias Köppe
commit bcbb58f10a840f43c1359934b85bfef9c143731c
Merge: 08d5d97336 9b3ddf95fd
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:21 2024 +0200
gh-37720: pkgs/sagemath-repl/pyproject.toml.m4: Declare extra 'sphinx'
<!-- ^ Please provide a concise and informative title. -->
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description below. -->
<!-- ^ For example, instead of "Fixes #12345" use "Introduce new method
to calculate 1 + 2". -->
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example, "Fixes #12345". -->
As discussed in
https://github.com/sagemath/sage/pull/37589#issuecomment-2030456264, the
Sage documentation system uses Sphinx to format the documentation in the
terminal, for example in the help system.
For the modularization project, a simple fallback for the case of Sphinx
not being present was added.
Here we declare the corresponding "extra" so that users can do `pip
install sagemath-repl[sphinx]`.
### :memo: Checklist
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- [ ] I have updated the documentation accordingly.
### :hourglass: Dependencies
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URL: https://github.com/sagemath/sage/pull/37720
Reported by: Matthias Köppe
Reviewer(s):
commit 08d5d97336d5cb87f4e9731b724b320e8cef771f
Merge: 253169ff7b 5a61d3c103
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:18 2024 +0200
gh-37712: src/tox.ini (rst): Add missing Sphinx roles
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Fixes #37711
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URL: https://github.com/sagemath/sage/pull/37712
Reported by: Matthias Köppe
Reviewer(s): Frédéric Chapoton
commit 253169ff7b83df66d20846983ac9ce2982f3a18e
Merge: 35f34ee0f6 3dc65b5797
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:16 2024 +0200
gh-37707: Implement an iterator for absolute number fields
<!-- ^ Please provide a concise and informative title. -->
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description below. -->
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to calculate 1 + 2". -->
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example, "Fixes #12345". -->
We use the $\mathbb{Q}$ vector space structure. Although because of
#37706, we go through `cartesian_product`.
If there is an easy way to implement this in full generality (i.e., all
number fields), please let me know.
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URL: https://github.com/sagemath/sage/pull/37707
Reported by: Travis Scrimshaw
Reviewer(s): Matthias Köppe
commit 35f34ee0f66904d9f2766b646664ae67cedd3aae
Merge: 0a16c78b4e e077f1edf7
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:11 2024 +0200
gh-37703: Implement an is_nilpotent() method for matrices
<!-- ^ Please provide a concise and informative title. -->
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description below. -->
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to calculate 1 + 2". -->
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example, "Fixes #12345". -->
Checking if a matrix is nilpotent is a fundamental test that Sage is
(surprisingly) missing. We check this by using the char poly.
### :memo: Checklist
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<!-- - #34567: ... -->
URL: https://github.com/sagemath/sage/pull/37703
Reported by: Travis Scrimshaw
Reviewer(s): Frédéric Chapoton, Martin Rubey
commit 0a16c78b4e2b677ba30b198fdc781d38e595c9d8
Merge: 9d788cb197 7e8aa98fa6
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:04 2024 +0200
gh-37699: Add `approximate_closest_vector` to `IntegerLattice`, using Babai's nearest plane algorithm
This PR implements Babai's nearest plane algorithm to find vectors close
to a given vector in an integer lattice.
I would appreciate if someone could verify the bound stated in the
docstring, it is inferred from Babai's original paper but parameterized
to use the `delta` parameter of the LLL algorithm.
Ideas for improvements:
- The doctest is currently the same as for `closest_vector`, this could
be expanded
- The `delta` parameter for LLL needs to be kept track of by the user.
How "much" the basis has been reduced (i.e to how high a `delta` value)
could be kept track of by the class and if a further reduction is needed
for some given bound then it could be performed.
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URL: https://github.com/sagemath/sage/pull/37699
Reported by: TheBlupper
Reviewer(s): grhkm21, TheBlupper
commit 9d788cb19732f9f750c6d5a25c28ccb958414112
Merge: 6925269840 d63ab2607e
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:02 2024 +0200
gh-37689: Fix changes.html in doc preview
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by changing the base doc url.
The base doc url is where the doc preview for the released version is
uploaded. It changed recently:
https://github.com/sagemath/sage/issues/34874#issuecomment-1870589626,
but we didn't fix accordingly here: [.ci/create-changes-
html.sh](https://github.com/sagemath/sage/blob/develop/.ci/create-
changes-html.sh)
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URL: https://github.com/sagemath/sage/pull/37689
Reported by: Kwankyu Lee
Reviewer(s):
commit 6925269840b81d3a1085ae900037e71dfd440c87
Merge: 12a003eddd 3b137b50a0
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:59 2024 +0200
gh-37688: typo
Small typo
URL: https://github.com/sagemath/sage/pull/37688
Reported by: Dennis Yurichev
Reviewer(s): Martin Rubey
commit 12a003eddd08bcac14c88becd82bf52af599fe6c
Merge: 3c9a67a2f0 6184336d73
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:56 2024 +0200
gh-37687: provide a construction functor using a single functor for families
We enable sage to find common parents also when symmetric functions are
involved. In particular, we provide a functorial construction that takes
a commutative (coefficient) ring and produces a (commutative) ring of
symmetric functions over this ring.
For Macdonald polynomials and other symmetric functions that involve
parameters we cheat a bit: the categories should actually be commutative
rings with distinguished elements (namely, the parameters). However,
having these is very likely overkill.
This is an alternative to #37220, relying on individual construction
functors instead of passing around strings, and #37686, which provides
an individual functor for each family.
URL: https://github.com/sagemath/sage/pull/37687
Reported by: Martin Rubey
Reviewer(s): Travis Scrimshaw
commit 3c9a67a2f0f8d42c1167f7fa192c70d29cdf6766
Merge: 1ab35e3a69 31645a4f35
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:53 2024 +0200
gh-37683: some shortcuts using bool
fixes suggested by `ruff --select=SIM210`
namely use `bool` for concision
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URL: https://github.com/sagemath/sage/pull/37683
Reported by: Frédéric Chapoton
Reviewer(s): Matthias Köppe, Travis Scrimshaw
commit 1ab35e3a696baf5a2fdd866a670c32611fa4a996
Merge: 654ed08b89 449864f0af
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:49 2024 +0200
gh-37680: a few more uses of "in Fields()"
Just replacing some tests by `R in Fields()` in some pyx files outside
the `rings` folder
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URL: https://github.com/sagemath/sage/pull/37680
Reported by: Frédéric Chapoton
Reviewer(s): Matthias Köppe
commit 654ed08b899e3a0bcd2d72a9ea66e5f1a96569a8
Merge: 042153b0d9 a8671aef33
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:44 2024 +0200
gh-37679: simplifications in symmetric_ideal.py
some simplifications in `symmetric_ideal`
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URL: https://github.com/sagemath/sage/pull/37679
Reported by: Frédéric Chapoton
Reviewer(s): Matthias Köppe
commit 042153b0d976f8ec7b7489c404a17084321e3e06
Merge: 0de7848873 5d4a91fa85
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:41 2024 +0200
gh-37677: some simplifications in moment-angle complex
a bunch of code details in the modified file
fixes #36217
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URL: https://github.com/sagemath/sage/pull/37677
Reported by: Frédéric Chapoton
Reviewer(s): Travis Scrimshaw
commit 0de7848873bcda21b916e13ad71dd0dbe6aa9ff0
Merge: 014ccc31c4 e0ef88414d
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:38 2024 +0200
gh-37674: some pep8 and ruff cleanups in modules/
some ruff and pep8 cleanup in the `modules` folder
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URL: https://github.com/sagemath/sage/pull/37674
Reported by: Frédéric Chapoton
Reviewer(s): Travis Scrimshaw
commit 014ccc31c4118b929bb46c0811331f828041aee4
Merge: 93cc706453 42b4b671c3
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:34 2024 +0200
gh-37673: upgrade msolve to 0.6.5
routine upgrade, dropping already applied patch
URL: https://github.com/sagemath/sage/pull/37673
Reported by: Dima Pasechnik
Reviewer(s): Dima Pasechnik, Marc Mezzarobba, Matthias Köppe
commit 93cc7064532b3456e5520833121e761078078576
Merge: cf431c8d40 f9ddc324b8
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:31 2024 +0200
gh-37672: src/sage/modular/quasimodform/ring.py: Fix pycodestyle warning
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URL: https://github.com/sagemath/sage/pull/37672
Reported by: Matthias Köppe
Reviewer(s): Frédéric Chapoton
commit cf431c8d40397205bb0f2e1f2843beec16788236
Merge: 2c71f81f0d 378ec74794
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:28 2024 +0200
gh-37671: pkgs/sagemath-standard: Support gpep517
From https://github.com/sagemath/sage/pull/37138#issuecomment-2018937633
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URL: https://github.com/sagemath/sage/pull/37671
Reported by: Matthias Köppe
Reviewer(s): François Bissey
commit 2c71f81f0d804932deb11f3d28eb6e7962593076
Merge: 5801382f06 b8757d814e
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:24 2024 +0200
gh-37668: Wrong results in is_isotopic method of the Link class for certain chiral link
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The following result is wrong, since `K10_67` is a chiral knot:
```
sage: L = KnotInfo.K10_67
....: L1 = L.link()
....: L1r = L.link().reverse()
....: L1.is_isotopic(L1r)
True
```
The problem is that the `get_knotinfo` method currently does not
distinguish between all four symmetry mutants of a chiral knot or link.
In the example, `get_knotinfo` detects both knots as *not mirrored* to
the symmetry mutant of `K10_67` recorded in the KnotInfo database, as
you can see from the verbose messages:
```
sage: set_verbose(1)
sage: L1.is_isotopic(L1r)
verbose 1 (4365: link.py, is_isotopic) KnotInfo other: KnotInfo.K10_67
mirrored False
True
```
The wrong conclusion in `is_isotopic` is that they must be isotopic.
The idea in this PR is to replace the boolean `mirrored` in the output
of `get_knotinfo` with the value of an enum representing all symmetry
mutants for an entry of the KnotInfo database. Of course, this requires
major revisions in the `get_knotinfo` and `is_isotopic` methods. The key
to this is a new local method `_knotinfo_matching_dict` that builds on
`_knotinfo_matching_list` and returns the matching list for all symmetry
mutants.
On the occasion of that revision, I also fix other wrong results for
example this one of a multi-component link which is not amphicheiral,
but reversible:
```
sage: L = KnotInfo.L6a2_0
sage: L1 = L.link()
sage: L2 = L.link(L.items.braid_notation)
sage: L1.is_isotopic(L2)
False
```
This bug is due to `get_knotinfo` returning the wrong mirror version for
`L1` concerning `L6a2_1`:
```
...
sage: L1.get_knotinfo(unique=False)
[(<KnotInfo.L6a2_0: 'L6a2{0}'>, False), (<KnotInfo.L6a2_1: 'L6a2{1}'>,
False)]
sage: L2.get_knotinfo(unique=False)
[(<KnotInfo.L6a2_0: 'L6a2{0}'>, False), (<KnotInfo.L6a2_1: 'L6a2{1}'>,
True)]
```
In addition to these fixes, improvements and corresponding adjustments,
I correct some document formatting.
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URL: https://github.com/sagemath/sage/pull/37668
Reported by: Sebastian Oehms
Reviewer(s): Sebastian Oehms, Travis Scrimshaw
commit 5801382f0638c7c8f50ae5a906b85306e5350fb5
Merge: cf365e5e51 bcc326d972
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:11 2024 +0200
gh-37667: Fix noexcept clauses (#37560)
In #36507 I added a lot of `noexcept` clauses guided by a warning which
is not quite right (see
https://github.com/cython/cython/pull/5999#issuecomment-1986868208).
A new warning in 3.0.9 shows the mistake (incorrectly added `noexcept`
clauses). This broke some doctests (#37560) and a workaround was
implemented for 10.3 (#37583) since we were too close to release.
This PR now does the proper fix, removing all the incorrect `noexcept`,
and also adding a few missing `noexcept`.
Note: if one tries this PR with cython <= 3.0.8 it seems it's wrong in
the sense that it will show 40k more warnings after the PR. These are
*incorrect* warnings.
If one uses cython 3.0.9 each of these 40k lines give a correct warning
before this PR and an incorrect warnings after the PR, and there is no
way to avoid 40k warnings.
To confirm this PR is a good one, one needs to use cython 3.0.9 +
https://github.com/cython/cython/pull/6087 or wait for cython 3.0.10. In
this case, the warnings are correct and one will get 40k warnings before
the PR and no warning after the PR.
The last commit reverts the workaround from #37583 so we don't silence
these warnings on `cython()` now that we have our own code right.
@vbraun: this is "almost trivial" but touches too many files. Could we
merge it in beta0 to avoid conflicts? I did this "kind of" automatically
and I've been testing it for two weeks in almost all my builds. The
changes made should not affect behaviour at all in the legacy mode we
are using cython.
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URL: https://github.com/sagemath/sage/pull/37667
Reported by: Gonzalo Tornaría
Reviewer(s): Gonzalo Tornaría, Matthias Köppe
commit cf365e5e51d30495f823ed928e0fe027166545d0
Merge: 59bf21efe7 a47b98b32e
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:08 2024 +0200
gh-37663: sage/rings/{complex,real}*: Untitlecase titles, add refs to libraries
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This cleans up the table of contents
https://deploy-preview-37663--
sagemath.netlify.app/html/en/reference/rings_numerical/
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- Depends on #37406 (merged here to resolve merge conflict)
URL: https://github.com/sagemath/sage/pull/37663
Reported by: Matthias Köppe
Reviewer(s): Marc Mezzarobba
commit 59bf21efe755cac20496bb417285a7e3545bc790
Merge: 2fd04522f3 210c5d8389
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:06 2024 +0200
gh-37661: some cross-references btw doc of RR, RBF, ...
(mainly intended to make RBF and CBF, which are the most powerful
implementations for most purposes, more discoverable)
URL: https://github.com/sagemath/sage/pull/37661
Reported by: Marc Mezzarobba
Reviewer(s):
commit 2fd04522f3caaca5fff0f78f1f1dccc6c0027475
Merge: 03f81897de 16a5261134
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:02 2024 +0200
gh-37660: Fix e302 libs pyx
This is adding missing empty lines (pycodestyle E302) in pyx files in
the `modules` and `libs` folders.
Also some little tweak in code in the singular libs files.
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URL: https://github.com/sagemath/sage/pull/37660
Reported by: Frédéric Chapoton
Reviewer(s): David Coudert
commit 03f81897de2bf0aaf6b7fa82982b17251b0c9fd1
Merge: 81b4ddccd1 23c45b1d61
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:59 2024 +0200
gh-37659: fix ruff codes UP012 and UP023
scripted using `ruff` ; only two minor changes
see https://docs.astral.sh/ruff/rules/#pyupgrade-up
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URL: https://github.com/sagemath/sage/pull/37659
Reported by: Frédéric Chapoton
Reviewer(s): Matthias Köppe
commit 81b4ddccd1de963f7731661106e1e425efd2e76b
Merge: 74a82d7ce4 4fa6f09984
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:54 2024 +0200
gh-37655: Removed caching of determinant in LLL for the `NTL:LLL`-algorithm
The method previously computed the square root of the squared
determinant to cache, thus caching the absolute value of the determinant
instead of the determinant. Therefore we remove this caching completely,
which fixes #37236.
URL: https://github.com/sagemath/sage/pull/37655
Reported by: Sebastian A. Spindler
Reviewer(s): Vincent Delecroix
commit 74a82d7ce445d8d9e66595887e9fcdf40f838702
Merge: 34539cdb4b 51d423d5a2
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:52 2024 +0200
gh-37652: fix typos and no "Algebra" in the doc
This fixes a bunch of typos in the doc, and also rewrites one example to
use `Parent` instead of the auld `Algebra`
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URL: https://github.com/sagemath/sage/pull/37652
Reported by: Frédéric Chapoton
Reviewer(s): Matthias Köppe
commit 34539cdb4b65fbb8f34f738c15f41a800de25141
Merge: 7a5ba77a93 5f32f5f882
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:49 2024 +0200
gh-37651: use parent in asymptotic ring
trying to use the modern `Parent` and categories in the asymptotic ring,
instead of the auld `Algebra`
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URL: https://github.com/sagemath/sage/pull/37651
Reported by: Frédéric Chapoton
Reviewer(s): Marc Mezzarobba
commit 7a5ba77a93cef0ee7a44f4228070e48b890d2b73
Merge: d4ab336474 4fa36454b5
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:45 2024 +0200
gh-37640: Modified `.is_reduced()` of `binary_qf.py` to avoid square root computation
Adapted the checks in `.is_reduced()` to avoid the square root
computation, which fixes #37635. Furthermore added a non-singularity
check.
This adaption is based on the observation that $$|\sqrt{D} - 2 \cdot
|a|| < b < \sqrt{D}$$
if and only if $$b > 0, \ a \cdot c < 0 \text{ and } (a-c)^2 < D$$
are all satisfied simultaneously (where $D = b^2 - 4ac > 0$).
The above can be proven in a straightforward manner by taking squares
and square roots while making sure that the numbers being squared are
always positive, so that inequalities are preserved.
URL: https://github.com/sagemath/sage/pull/37640
Reported by: Sebastian A. Spindler
Reviewer(s): Lorenz Panny
commit d4ab336474b9f40b9e7f637c9b3ba6ac8bbc2135
Merge: 3c174ef6a6 bf0c3695cc
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:41 2024 +0200
gh-37639: add Legendre transform and suspension for lazy symmetric functions
This adds two useful functions, particularly important when working with
operads and Koszul duality.
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URL: https://github.com/sagemath/sage/pull/37639
Reported by: Frédéric Chapoton
Reviewer(s): Martin Rubey, Travis Scrimshaw
commit 3c174ef6a69d80e733dc7461b44fbc8b646ac30d
Merge: 6ab45f666b d7021096c4
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:38 2024 +0200
gh-37638: use strings as label in modular-decomposition trees
Fixing #37631
and adding a note saying that labels of rooted trees must be comparable
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URL: https://github.com/sagemath/sage/pull/37638
Reported by: Frédéric Chapoton
Reviewer(s): cyrilbouvier
commit 6ab45f666ba665ee9a0c517233830bafbea544b9
Merge: 8e26e27572 c4c26ee1bf
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:36 2024 +0200
gh-37637: Update jupyter-sphinx to version 0.5.3 and pin thebe to version 0.8.2
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jupyter-sphinx that we are shipping was patched to use thebe@latest,
which is the cause of the current breakdown of the sage live doc.
The patch to jupyter-sphinx is partly based on
https://github.com/jupyter/jupyter-sphinx/pull/231
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URL: https://github.com/sagemath/sage/pull/37637
Reported by: Kwankyu Lee
Reviewer(s): Matthias Köppe
commit 8e26e27572073bc9f54839143f52d2d7e4c710e0
Merge: 13a555d970 af97e6da28
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:28 2024 +0200
gh-37634: The Glaisher-Franklin bijections on integer partitions
The Glaisher-Franklin bijections, for a positive integer $s$, map the
set of parts divisible by $s$ to the set of parts which occur at least
$s$ times, see https://www.findstat.org/MapsDatabase/Mp00312 for the
$s=2$ case.
This generalizes and streamlines the code from findstat.
URL: https://github.com/sagemath/sage/pull/37634
Reported by: Martin Rubey
Reviewer(s): Martin Rubey, Travis Scrimshaw
commit 13a555d970eefceddd20728c6a3275447713ea7e
Merge: 58e8c578fd d45422e64e
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:23 2024 +0200
gh-37606: Border matrix
<!-- ^ Please provide a concise and informative title. -->
<!-- ^ Don't put issue numbers in the title, do this in the PR
description below. -->
<!-- ^ For example, instead of "Fixes #12345" use "Introduce new method
to calculate 1 + 2". -->
<!-- v Describe your changes below in detail. -->
<!-- v Why is this change required? What problem does it solve? -->
<!-- v If this PR resolves an open issue, please link to it here. For
example, "Fixes #12345". -->
Plain TeX users may remember `\bordermatrix`. Here we implement this as
options of the `Matrix` class's `str` method.
```
sage: M = matrix([[1,2,3], [4,5,6], [7,8,9]])
sage: M.subdivide(None, 2)
sage: print(M.str(unicode=True,
....: top_border=['ab', 'cde', 'f'],
....: bottom_border=['*', '', ''],
....: left_border=[1, 10, 100],
....: right_border=['', ' <', '']))
ab cde f
1⎛ 1 2│ 3⎞
10⎜ 4 5│ 6⎟ <
100⎝ 7 8│ 9⎠
*
```
Follow-up PR: As the guiding application for this feature, we equip
finite-dimensional modules with basis with methods `_repr_matrix`,
`_ascii_art_matrix`, `_unicode_art_matrix` that can be used as in this
example:
```
sage: M = matrix(ZZ, [[1, 0, 0], [0, 1, 0]],
....: column_keys=['a', 'b', 'c'],
....: row_keys=['v', 'w']); M
Generic morphism:
From: Free module generated by {'a', 'b', 'c'} over
Integer Ring
To: Free module generated by {'v', 'w'} over Integer
Ring
sage: M._unicode_art_ = M._unicode_art_matrix
sage: unicode_art(M) #
indirect doctest
a b c
v⎛1 0 0⎞
w⎝0 1 0⎠
```
### :memo: Checklist
<!-- Put an `x` in all the boxes that apply. -->
- [x] The title is concise and informative.
- [x] The description explains in detail what this PR is about.
- [ ] I have linked a relevant issue or discussion.
- [ ] I have created tests covering the changes.
- [ ] I have updated the documentation accordingly.
### :hourglass: Dependencies
<!-- List all open PRs that this PR logically depends on. For example,
-->
<!-- - #12345: short description why this is a dependency -->
<!-- - #34567: ... -->
URL: https://github.com/sagemath/sage/pull/37606
Reported by: Matthias Köppe
Reviewer(s): David Coudert, Matthias Köppe
commit 58e8c578fdc79d94dba5de30ae3a5ba6c08630ef
Merge: 294eed4041 c1d38c77d2
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:20 2024 +0200
gh-37563: trying a change in unique_representation
namely break the loop over `mro` once found what we want
I am not sure at all that this keeps the expected properties, but this
is more efficient..
### :memo: Checklist
- [x] The title is concise and informative.
- [x] The description explains in detail what this PR is about.
URL: https://github.com/sagemath/sage/pull/37563
Reported by: Frédéric Chapoton
Reviewer(s): Travis Scrimshaw
commit 294eed4041447cb7420462f9548bc9195e376565
Merge: 14da417689 def8e56c30
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:17 2024 +0200
gh-37546: Sphinx ext links for Sage source files
<!-- ^ Please provide a concise and informative title. -->
<!-- ^ Don't put issue numbers in the title, do this in the PR
description below. -->
<!-- ^ For example, instead of "Fixes #12345" use "Introduce new method
to calculate 1 + 2". -->
<!-- v Describe your changes below in detail. -->
<!-- v Why is this change required? What problem does it solve? -->
<!-- v If this PR resolves an open issue, please link to it here. For
example, "Fixes #12345". -->
In the documentation, we can now write `` :sage_root:`src/setup.py` ``
or `` :sage_root:`src/doc/en/installation` ``, and it will be formatted
uniformly, and a link to the file in the repository will be created.
- Rebased version of #33756
Fixes #33756.
### :memo: Checklist
<!-- Put an `x` in all the boxes that apply. -->
- [x] The title is concise and informative.
- [ ] The description explains in detail what this PR is about.
- [x] I have linked a relevant issue or discussion.
- [ ] I have created tests covering the changes.
- [ ] I have updated the documentation accordingly.
### :hourglass: Dependencies
<!-- List all open PRs that this PR logically depends on. For example,
-->
<!-- - #12345: short description why this is a dependency -->
<!-- - #34567: ... -->
URL: https://github.com/sagemath/sage/pull/37546
Reported by: Matthias Köppe
Reviewer(s): David Coudert, Kwankyu Lee
commit 14da417689b26c72b4369c8a352d3f8345a3c259
Merge: 59ced5e363 1e66857af1
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:13 2024 +0200
gh-37497: remove zombie code
We remove zombie code for solving linear systems over a finite field,
which was (likely accidentally) created in #23214, but leads to errors
when solving sparse linear equations over finite fields.
This does not quite fix the issue, because we now fall back to generic
code.
Fixes #28586
URL: https://github.com/sagemath/sage/pull/37497
Reported by: Martin Rubey
Reviewer(s): Matthias Köppe
commit 59ced5e363eef8f18c34b65fbde75f007015ee0f
Merge: fbaec798ee 6704b34380
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:09 2024 +0200
gh-37425: Remove mention of patchbot, remove 'make buildbot-python3'
<!-- ^^^^^
Please provide a concise, informative and self-explanatory title.
Don't put issue numbers in there, do this in the PR body below.
For example, instead of "Fixes #1234" use "Introduce new method to
calculate 1+1"
-->
<!-- Describe your changes here in detail -->
<!-- Why is this change required? What problem does it solve? -->
<!-- If this PR resolves an open issue, please link to it here. For
example "Fixes #12345". -->
<!-- If your change requires a documentation PR, please link it
appropriately. -->
### :memo: Checklist
<!-- Put an `x` in all the boxes that apply. -->
<!-- If your change requires a documentation PR, please link it
appropriately -->
<!-- If you're unsure about any of these, don't hesitate to ask. We're
here to help! -->
<!-- Feel free to remove irrelevant items. -->
- [x] The title is concise, informative, and self-explanatory.
- [ ] The description explains in detail what this PR is about.
- [ ] I have linked a relevant issue or discussion.
- [ ] I have created tests covering the changes.
- [ ] I have updated the documentation accordingly.
### :hourglass: Dependencies
<!-- List all open PRs that this PR logically depends on
- #12345: short description why this is a dependency
- #34567: ...
-->
- Depends on https://github.com/sagemath/sage/pull/37421
<!-- If you're unsure about any of these, don't hesitate to ask. We're
here to help! -->
URL: https://github.com/sagemath/sage/pull/37425
Reported by: Matthias Köppe
Reviewer(s): Frédéric Chapoton
commit fbaec798ee1a0df0e9ded0dd2dd0811387cbb797
Merge: 7855be0849 cb4e7184b3
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:06 2024 +0200
gh-37391: Make installation of "wheel" packages less noisy
<!-- ^^^^^
Please provide a concise, informative and self-explanatory title.
Don't put issue numbers in there, do this in the PR body below.
For example, instead of "Fixes #1234" use "Introduce new method to
calculate 1+1"
-->
<!-- Describe your changes here in detail -->
Some care for `build/bin/sage-spkg`, reducing unhelpful verbosity. In
particular, for "wheel" packages (https://deploy-livedoc--
sagemath.netlify.app/html/en/developer/packaging#package-source-types),
there is no build step, so there is no point in talking about what C
compiler is in use.
Also saving a few lines of output (and making it clearer who does what)
by prefixing the output from the various `spkg-...` scripts.
Example:
```
$ make packaging-no-deps
[packaging-23.2] Using cached file /Users/mkoeppe/s/sage/sage-
rebasing/worktree-pristine/upstream/packaging-23.2-py3-none-any.whl
[packaging-23.2] Setting up build directory /Users/mkoeppe/s/sage/sage-
rebasing/worktree-pristine/local/var/lib/sage/venv-
python3.11/var/tmp/sage/build/packaging-23.2
[packaging-23.2] [spkg-piprm] Found existing installation: packaging
23.2
[packaging-23.2] [spkg-piprm] Uninstalling packaging-23.2:
[packaging-23.2] [spkg-piprm] Successfully uninstalled packaging-23.2
[packaging-23.2] Removing stamp file /Users/mkoeppe/s/sage/sage-
rebasing/worktree-pristine/local/var/lib/sage/venv-
python3.11/var/lib/sage/installed/packaging-23.2
[packaging-23.2] [spkg-install] Staged wheel file, staged
/Users/mkoeppe/s/sage/sage-rebasing/worktree-
pristine/local/var/lib/sage/venv-
python3.11/var/lib/sage/scripts/packaging/spkg-requirements.txt
[packaging-23.2] Moving package files from temporary location
/Users/mkoeppe/s/sage/sage-rebasing/worktree-
pristine/local/var/lib/sage/venv-
python3.11/var/tmp/sage/build/packaging-23.2/inst to
/Users/mkoeppe/s/sage/sage-rebasing/worktree-
pristine/local/var/lib/sage/venv-python3.11
[packaging-23.2] [spkg-pipinst] Using pip 23.3.1 from
/Users/mkoeppe/s/sage/sage-rebasing/worktree-
pristine/local/var/lib/sage/venv-python3.11/lib/python3.11/site-
packages/pip (python 3.11)
[packaging-23.2] [spkg-pipinst] Looking in links:
/Users/mkoeppe/s/sage/sage-rebasing/worktree-
pristine/local/var/lib/sage/venv-python3.11/var/lib/sage/wheels
[packaging-23.2] [spkg-pipinst] Processing /Users/mkoeppe/s/sage/sage-
rebasing/worktree-pristine/local/var/lib/sage/venv-
python3.11/var/lib/sage/wheels/packaging-23.2-py3-none-any.whl (from -r
/Users/mkoeppe/s/sage/sage-rebasing/worktree-
pristine/local/var/lib/sage/venv-
python3.11/var/lib/sage/scripts/packaging/spkg-requirements.txt (line
1))
[packaging-23.2] [spkg-pipinst] Installing collected packages: packaging
[packaging-23.2] [spkg-pipinst] ERROR: pip's dependency resolver does
not currently take into account all the packages that are installed.
This behaviour is the source of the following dependency conflicts.
[packaging-23.2] [spkg-pipinst] meson-python 0.15.0 requires
meson>=0.63.3; python_version < "3.12", which is not installed.
[packaging-23.2] [spkg-pipinst] tox 4.11.1 requires cachetools>=5.3.1,
which is not installed.
[packaging-23.2] [spkg-pipinst] tox 4.11.1 requires chardet>=5.2, which
is not installed.
[packaging-23.2] [spkg-pipinst] Successfully installed packaging-23.2
[packaging-23.2] Deleting build directory /Users/mkoeppe/s/sage/sage-
rebasing/worktree-pristine/local/var/lib/sage/venv-
python3.11/var/tmp/sage/build/packaging-23.2
[packaging-23.2] Finished installing packaging-23.2
```
Also displaying build times for each package, even when using `make
V=0`, but suppressing very short build times:
```
$ make V=0
...
[setuptools_scm-8.0.4] installing. Log file: /Users/mkoeppe/s/sage/sage-
rebasing/worktree-pristine/logs/pkgs/setuptools_scm-8.0.4.log
[hatchling-1.20.0] installing. Log file: /Users/mkoeppe/s/sage/sage-
rebasing/worktree-pristine/logs/pkgs/hatchling-1.20.0.log
[setuptools_scm-8.0.4] successfully installed.
[hatchling-1.20.0] successfully installed.
...
[sage_conf-10.3.beta8] successfully installed (real 11.36 user 8.32
sys 2.67).
[pyproject_metadata-0.7.1] successfully installed (real 16.57 user
10.70 sys 2.97).
[ipykernel-6.27.1] successfully installed (real 19.31 user 11.35 sys
3.71).
```
<!-- Why is this change required? What problem does it solve? -->
<!-- If this PR resolves an open issue, please link to it here. For
example "Fixes #12345". -->
<!-- If your change requires a documentation PR, please link it
appropriately. -->
### :memo: Checklist
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<!-- If your change requires a documentation PR, please link it
appropriately -->
<!-- If you're unsure about any of these, don't hesitate to ask. We're
here to help! -->
<!-- Feel free to remove irrelevant items. -->
- [x] The title is concise, informative, and self-explanatory.
- [ ] The description explains in detail what this PR is about.
- [ ] I have linked a relevant issue or discussion.
- [ ] I have created tests covering the changes.
- [ ] I have updated the documentation accordingly.
### :hourglass: Dependencies
<!-- List all open PRs that this PR logically depends on
- #12345: short description why this is a dependency
- #34567: ...
-->
<!-- If you're unsure about any of these, don't hesitate to ask. We're
here to help! -->
URL: https://github.com/sagemath/sage/pull/37391
Reported by: Matthias Köppe
Reviewer(s): Kwankyu Lee
commit 7855be084987c6e200d4c65fee0f9d819510a819
Merge: 031064b9ce 236361bce6
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:57:55 2024 +0200
gh-37361: Add iterators, Whitney numbers, characteristic polynomial, etc
Changes (mostly in `matroid.pyx`):
- Add `_iterator` functions for `bases`, `circuits`, etc, and use them
internally (this avoids memory consumption/blowups)
- Add Whitney numbers functions (for the first and second kind)
- Correct `f_vector` definition (the definition up till now referred to
the Whitney numbers of second kind)
- Add characteristic polynomial
- Correct `is_valid` function to be `False` on a negative rank value
- Optimize `circuits` function (e.g. `sage: %time C =
matroids.CompleteGraphic(8).circuits()` drops from `4m` to `1m`)
- Optimize `broken_circuit_complex` function
- Improve docstrings (1-line outputs and other changes)
### ⌛ Dependencies
* Depends on #37667
URL: https://github.com/sagemath/sage/pull/37361
Reported by: gmou3
Reviewer(s): gmou3, Matthias Köppe, Travis Scrimshaw
commit 031064b9cee8f7bec802ff0af0c9c28e3fb31b44
Merge: ad0a4b03b3 34564a3962
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:57:47 2024 +0200
gh-37340: Add class FlatsMatroid
This matroid subclass allows the definition and internal representation
of a matroid based on its flats (closed sets). This representation can
be advantageous for some algorithms. This completes the list of the most
standard matroid definitions (bases, circui…
jacksonwalters
added a commit
to jacksonwalters/sage
that referenced
this pull request
Apr 9, 2024
commit a047ccfd4c4454411027afb9dd0981d0ae4a8293
Merge: cc1aa671e5 14a1e5c078
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Tue Apr 9 14:41:10 2024 -0400
Merge branch 'pr/37748' of https://github.com/jacksonwalters/sage into pr/37748
commit cc1aa671e549388cc5d325cce8893062125c52dd
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Tue Apr 9 14:39:37 2024 -0400
Squashed commit of the following:
commit 14a1e5c078d1684f751b9e7ef450f197e7bcf27f
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 23:01:35 2024 -0400
Update src/sage/combinat/symmetric_group_algebra.py
Good idea.
moved description from _dft_modular to dft docstring
remove doctest with p=3, n=3
Update src/sage/combinat/symmetric_group_algebra.py
Update src/sage/combinat/symmetric_group_algebra.py
Co-Authored-By: Travis Scrimshaw <clfrngrown@aol.com>
commit f3807cb141bae308906295f605939d4b2b205a5a
Merge: 9ad2152942 8ea5214695
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 20:12:53 2024 -0400
Merge branch 'develop' into pr/37748
commit 8ea5214695f742eccd34bd88600771b7121cdb9f
Author: Release Manager <release@sagemath.org>
Date: Tue Apr 9 00:29:19 2024 +0200
Updated SageMath version to 10.4.beta2
commit 9ad2152942819a55c20d80485ad8cd8925969c6c
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 13:38:43 2024 -0400
double backslash for math
commit 619a48dea00a0a67b8d4e542948200dc23e9589a
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 13:33:00 2024 -0400
add examples
commit 527ae2670dd3a37b25a192ab49dad7f4c16dd5aa
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 13:24:13 2024 -0400
form should default to None
if form is None, check if characteristic of field divides order of group. if so, it's the modular case, and we return the projection onto idempotents change-of-basis, i.e. the MFT. if not, use semi-normal form.
commit 488e931da94f4872047ff8e839edc4a0c99b163e
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 13:09:54 2024 -0400
missing parantheses
commit 7e96c904b6bc47d2108930c039b95a14155d425b
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 13:00:57 2024 -0400
Update src/sage/combinat/symmetric_group_algebra.py
Co-authored-by: Travis Scrimshaw <clfrngrown@aol.com>
commit cf27c64dff0b77c6cca162849ec923ae14f4920f
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 13:00:14 2024 -0400
Update src/sage/combinat/symmetric_group_algebra.py
I thought I could do this, don't know why I convinced myself I needed flatten.
Co-authored-by: Travis Scrimshaw <clfrngrown@aol.com>
commit 92699f42eba524047b09d527981dab2456802958
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 12:59:16 2024 -0400
Update src/sage/combinat/symmetric_group_algebra.py
Co-authored-by: Travis Scrimshaw <clfrngrown@aol.com>
commit 68f2ef140f91356f55290d100ad8a5282f19c206
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 12:58:30 2024 -0400
Update src/sage/combinat/symmetric_group_algebra.py
Co-authored-by: Travis Scrimshaw <clfrngrown@aol.com>
commit 618d5e1a8cb11006ef9fa6642e33f06d5728d6ae
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 12:57:18 2024 -0400
Update src/sage/combinat/symmetric_group_algebra.py
Co-authored-by: Travis Scrimshaw <clfrngrown@aol.com>
commit 04db911e3f6a08b3be1bf5c295e913a40ee8b28a
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 12:56:37 2024 -0400
Update src/sage/combinat/symmetric_group_algebra.py
I see, so "None" if the user doesn't specify, and we determine which form based on whether p|n!. Sounds good.
Co-authored-by: Travis Scrimshaw <clfrngrown@aol.com>
commit e86f79410ebda01b8a85598a5754f9c383336ae1
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 11:09:57 2024 -0400
add doctest to ensure issue 37751 is fixed
commit f8c64d16b3d1c7b3d338d9d2339ae2e284df3c58
Merge: aedd2f3927 3079e2d897
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 10:55:44 2024 -0400
Merge branch 'pr/37748' of https://github.com/jacksonwalters/sage into pr/37748
commit aedd2f3927aac05dceeb97bd484afa82557652a8
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 10:55:43 2024 -0400
remove multiplication stars
commit 3079e2d897396222b0f23784a4d07a40f25b3c1f
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 10:54:38 2024 -0400
Update src/sage/combinat/symmetric_group_algebra.py
Co-authored-by: grhkm21 <83517584+grhkm21@users.noreply.github.com>
commit b14565299a6f5a82e5fae5080de88b455ce696e5
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 10:51:59 2024 -0400
docstring lines are wrapped at 80 characters
ensure each line is less than 80 characters
commit e3fcc1f59c4668f88c184649c18627480365e646
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 10:24:51 2024 -0400
keep form argument
keep form since there is a one year deprecation warning before removing arguments. show deprecation warning when default seminormal form is called, but suggest modular form which works in all cases
commit 6d187b153b5b5c3e29fe07d9efe925e34bf5baa5
Merge: 551139c09f c8d260a6fe
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 23:34:58 2024 +0200
gh-37764: ECM-related tests fail after an incremental build
### TL;DR:
This is because setting the default ECMBIN=ecm is only done when using
the configure test, but not when skipping the configure test because the
spkg is already installed.
### Steps to reproduce:
* ecm is not installed in the base os
* Sage make distclean && make succeeeds
* Tests succeed
* re-running ./bootstrap && ./configure && make works
* Tests now fail with PermissionError: [Errno 13] Permission denied: ''
### Dependencies
See also:
* https://github.com/sagemath/sage/pull/37701
* https://github.com/sagemath/sage/pull/37011#issuecomment-2023089743
URL: https://github.com/sagemath/sage/pull/37764
Reported by: Volker Braun
Reviewer(s): Matthias Köppe
commit 71ad110e196d9f17934d030ce1c000e11b50fee8
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Sun Apr 7 19:57:42 2024 -0400
trigger GitHub actions
commit c8d260a6fe37cb0379690e57dab6fd2a3d5d8048
Author: Volker Braun <tarpit@vbraun.imap.cc>
Date: Sun Apr 7 22:13:11 2024 +0200
Update build/pkgs/ecm/spkg-configure.m4
Co-authored-by: Matthias Köppe <mkoeppe@math.ucdavis.edu>
commit fbf896681da3ad1fad6c164e4d5a7cf452ec2eec
Author: Volker Braun <tarpit@vbraun.imap.cc>
Date: Sun Apr 7 21:35:42 2024 +0200
Update build/pkgs/ecm/spkg-configure.m4
Co-authored-by: Matthias Köppe <mkoeppe@math.ucdavis.edu>
commit 6531f7e415230d62fecd0a38fd804081341a9f32
Author: Volker Braun <tarpit@vbraun.imap.cc>
Date: Sun Apr 7 21:35:38 2024 +0200
Update build/pkgs/ecm/spkg-configure.m4
Co-authored-by: Matthias Köppe <mkoeppe@math.ucdavis.edu>
commit af0e24286a62a06d85e1baf49d0dc8f624965e5c
Author: Volker Braun <vbraun.name@gmail.com>
Date: Sun Apr 7 19:17:37 2024 +0200
ECM-related tests fail after an incremental build
This is because setting the default ECMBIN=ecm is only done when using
the configure test, but not when skipping the configure test because
the spkg is already installed.
Steps to reproduce:
* ecm is not installed in the base os
* Sage make distclean && make succeeeds
* Tests succeed
* re-running ./bootstrap && ./configure && make works
* Tests now fail with PermissionError: [Errno 13] Permission denied: ''
See also:
* https://github.com/sagemath/sage/pull/37701
* https://github.com/sagemath/sage/pull/37011#issuecomment-2023089743
commit 551139c09f26a5da96b1187c3f0dd17b8d80ef84
Merge: 03be519274 547d502ed5
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:43 2024 +0200
gh-37763: Fix tolerance for scipy 1.13
After updating scipy to 1.13:
```
**********************************************************************
File "pkgs/sagemath-standard/build/lib.linux-x86_64-cpython-
312/sage/matrix/matrix_double_dense.pyx", line 3686, in
sage.matrix.matrix_double_dense.Matrix_double_dense.exp
Failed example:
A.exp() # tol 1.1e-14
# needs sage.symbolic
Expected:
[-19.614602953804912 + 12.517743846762578*I 3.7949636449582176 +
28.88379930658099*I]
[ -32.383580980922254 + 21.88423595789845*I 2.269633004093535 +
44.901324827684824*I]
Got:
[-19.61460295380496 + 12.517743846762578*I 3.7949636449581874 +
28.88379930658104*I]
[-32.38358098092232 + 21.884235957898436*I 2.2696330040934853 +
44.901324827684896*I]
Tolerance exceeded in 1 of 8:
2.269633004093535 vs 2.2696330040934853, tolerance 3e-14 > 1.1e-14
**********************************************************************
```
This PR raises the tolerance to `3e-14` to fix this.
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URL: https://github.com/sagemath/sage/pull/37763
Reported by: Gonzalo Tornaría
Reviewer(s): Antonio Rojas
commit 03be519274f1e3aa424ea729f406180a10df1498
Merge: 4d88e898e2 cd41d1e414
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:37 2024 +0200
gh-37755: src/sage/graphs/graph_decompositions/tdlib.pyx: Use -std=c++11
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This is needed with the current Xcode command line tools on macOS with
boost from homebrew.
Similar to
https://github.com/sagemath/sage/pull/37646#issuecomment-2017108199
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URL: https://github.com/sagemath/sage/pull/37755
Reported by: Matthias Köppe
Reviewer(s): David Coudert
commit 4d88e898e203d9b7297d224f40d659c213701ccb
Merge: 9971cec642 6722976389
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:34 2024 +0200
gh-37753: Added rank check to doctest in `.gauss_on_polys`
Fixes #37732. Also removed assignment of vectors `v` in the same doctest
since they are not used.
URL: https://github.com/sagemath/sage/pull/37753
Reported by: Sebastian A. Spindler
Reviewer(s): Martin Rubey
commit 9971cec64239679ee00ee7b22415b98ed53fbbf6
Merge: 3df3305a64 80239bc925
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:31 2024 +0200
gh-37736: Reimplementing the Witt (Sym Func) change of basis, caches, and omega involution
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We reimplement the coercion from the Witt basis of symmetric functions
to the $h$, $e$, and $p$ bases and their inverses by using the
generating function identities and recursion for $w_n, h_n, e_n, p_n$
and the mulitplicative basis property for the general shape (in
particular, we attempt to minimize the number of multiplications and
maximize the use of the cache by recursively splitting the partition by
its smallest part). We cache the result using `@cached_method` instead
of custom classes. We also deprecate the `coerce_*` inputs.
We also take advantage that $\omega w_n = w_n$ when $n$ is odd to
compute the omega involution. This extends to a faster computation of
the antipode.
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URL: https://github.com/sagemath/sage/pull/37736
Reported by: Travis Scrimshaw
Reviewer(s): Darij Grinberg, Martin Rubey
commit 3df3305a6493f88ce86a1bc73e17c34ad01fbe33
Merge: 01333dfec1 ddcb3e45ca
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:27 2024 +0200
gh-37725: Fix typo/phrasing in README.md
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- Removed the phrase "It assumes that you have already cloned the git
repository" from the setup guide since the guide actually contains
instructions on cloning the repository
- Removed a random misplaced period
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URL: https://github.com/sagemath/sage/pull/37725
Reported by: Faisal
Reviewer(s): gmou3
commit 01333dfec1ae7a518260c0178d4a0b254b886157
Merge: bcbb58f10a 8378fe6fdd
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:24 2024 +0200
gh-37721: Renamed "ring" argument of matrix contructor to "base_ring"
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The matrix constructor used to accept ``ring`` as argument to specify a
the base ring of a matrix.
It now takes ``base_ring`` instead. ``ring`` is still accepted but
deprecated (I added a deprecation in the code).
This is for unification (``base_ring`` is what users expect from their
experience with other classes).
This solves @mkoeppe's issue #33380.
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URL: https://github.com/sagemath/sage/pull/37721
Reported by: SandwichGouda
Reviewer(s): Matthias Köppe
commit bcbb58f10a840f43c1359934b85bfef9c143731c
Merge: 08d5d97336 9b3ddf95fd
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:21 2024 +0200
gh-37720: pkgs/sagemath-repl/pyproject.toml.m4: Declare extra 'sphinx'
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As discussed in
https://github.com/sagemath/sage/pull/37589#issuecomment-2030456264, the
Sage documentation system uses Sphinx to format the documentation in the
terminal, for example in the help system.
For the modularization project, a simple fallback for the case of Sphinx
not being present was added.
Here we declare the corresponding "extra" so that users can do `pip
install sagemath-repl[sphinx]`.
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URL: https://github.com/sagemath/sage/pull/37720
Reported by: Matthias Köppe
Reviewer(s):
commit 08d5d97336d5cb87f4e9731b724b320e8cef771f
Merge: 253169ff7b 5a61d3c103
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:18 2024 +0200
gh-37712: src/tox.ini (rst): Add missing Sphinx roles
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Fixes #37711
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URL: https://github.com/sagemath/sage/pull/37712
Reported by: Matthias Köppe
Reviewer(s): Frédéric Chapoton
commit 253169ff7b83df66d20846983ac9ce2982f3a18e
Merge: 35f34ee0f6 3dc65b5797
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:16 2024 +0200
gh-37707: Implement an iterator for absolute number fields
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We use the $\mathbb{Q}$ vector space structure. Although because of
#37706, we go through `cartesian_product`.
If there is an easy way to implement this in full generality (i.e., all
number fields), please let me know.
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URL: https://github.com/sagemath/sage/pull/37707
Reported by: Travis Scrimshaw
Reviewer(s): Matthias Köppe
commit 35f34ee0f66904d9f2766b646664ae67cedd3aae
Merge: 0a16c78b4e e077f1edf7
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:11 2024 +0200
gh-37703: Implement an is_nilpotent() method for matrices
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Checking if a matrix is nilpotent is a fundamental test that Sage is
(surprisingly) missing. We check this by using the char poly.
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URL: https://github.com/sagemath/sage/pull/37703
Reported by: Travis Scrimshaw
Reviewer(s): Frédéric Chapoton, Martin Rubey
commit 0a16c78b4e2b677ba30b198fdc781d38e595c9d8
Merge: 9d788cb197 7e8aa98fa6
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:04 2024 +0200
gh-37699: Add `approximate_closest_vector` to `IntegerLattice`, using Babai's nearest plane algorithm
This PR implements Babai's nearest plane algorithm to find vectors close
to a given vector in an integer lattice.
I would appreciate if someone could verify the bound stated in the
docstring, it is inferred from Babai's original paper but parameterized
to use the `delta` parameter of the LLL algorithm.
Ideas for improvements:
- The doctest is currently the same as for `closest_vector`, this could
be expanded
- The `delta` parameter for LLL needs to be kept track of by the user.
How "much" the basis has been reduced (i.e to how high a `delta` value)
could be kept track of by the class and if a further reduction is needed
for some given bound then it could be performed.
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URL: https://github.com/sagemath/sage/pull/37699
Reported by: TheBlupper
Reviewer(s): grhkm21, TheBlupper
commit 9d788cb19732f9f750c6d5a25c28ccb958414112
Merge: 6925269840 d63ab2607e
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:02 2024 +0200
gh-37689: Fix changes.html in doc preview
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by changing the base doc url.
The base doc url is where the doc preview for the released version is
uploaded. It changed recently:
https://github.com/sagemath/sage/issues/34874#issuecomment-1870589626,
but we didn't fix accordingly here: [.ci/create-changes-
html.sh](https://github.com/sagemath/sage/blob/develop/.ci/create-
changes-html.sh)
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URL: https://github.com/sagemath/sage/pull/37689
Reported by: Kwankyu Lee
Reviewer(s):
commit 6925269840b81d3a1085ae900037e71dfd440c87
Merge: 12a003eddd 3b137b50a0
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:59 2024 +0200
gh-37688: typo
Small typo
URL: https://github.com/sagemath/sage/pull/37688
Reported by: Dennis Yurichev
Reviewer(s): Martin Rubey
commit 12a003eddd08bcac14c88becd82bf52af599fe6c
Merge: 3c9a67a2f0 6184336d73
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:56 2024 +0200
gh-37687: provide a construction functor using a single functor for families
We enable sage to find common parents also when symmetric functions are
involved. In particular, we provide a functorial construction that takes
a commutative (coefficient) ring and produces a (commutative) ring of
symmetric functions over this ring.
For Macdonald polynomials and other symmetric functions that involve
parameters we cheat a bit: the categories should actually be commutative
rings with distinguished elements (namely, the parameters). However,
having these is very likely overkill.
This is an alternative to #37220, relying on individual construction
functors instead of passing around strings, and #37686, which provides
an individual functor for each family.
URL: https://github.com/sagemath/sage/pull/37687
Reported by: Martin Rubey
Reviewer(s): Travis Scrimshaw
commit 3c9a67a2f0f8d42c1167f7fa192c70d29cdf6766
Merge: 1ab35e3a69 31645a4f35
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:53 2024 +0200
gh-37683: some shortcuts using bool
fixes suggested by `ruff --select=SIM210`
namely use `bool` for concision
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URL: https://github.com/sagemath/sage/pull/37683
Reported by: Frédéric Chapoton
Reviewer(s): Matthias Köppe, Travis Scrimshaw
commit 1ab35e3a696baf5a2fdd866a670c32611fa4a996
Merge: 654ed08b89 449864f0af
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:49 2024 +0200
gh-37680: a few more uses of "in Fields()"
Just replacing some tests by `R in Fields()` in some pyx files outside
the `rings` folder
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URL: https://github.com/sagemath/sage/pull/37680
Reported by: Frédéric Chapoton
Reviewer(s): Matthias Köppe
commit 654ed08b899e3a0bcd2d72a9ea66e5f1a96569a8
Merge: 042153b0d9 a8671aef33
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:44 2024 +0200
gh-37679: simplifications in symmetric_ideal.py
some simplifications in `symmetric_ideal`
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URL: https://github.com/sagemath/sage/pull/37679
Reported by: Frédéric Chapoton
Reviewer(s): Matthias Köppe
commit 042153b0d976f8ec7b7489c404a17084321e3e06
Merge: 0de7848873 5d4a91fa85
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:41 2024 +0200
gh-37677: some simplifications in moment-angle complex
a bunch of code details in the modified file
fixes #36217
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URL: https://github.com/sagemath/sage/pull/37677
Reported by: Frédéric Chapoton
Reviewer(s): Travis Scrimshaw
commit 0de7848873bcda21b916e13ad71dd0dbe6aa9ff0
Merge: 014ccc31c4 e0ef88414d
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:38 2024 +0200
gh-37674: some pep8 and ruff cleanups in modules/
some ruff and pep8 cleanup in the `modules` folder
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URL: https://github.com/sagemath/sage/pull/37674
Reported by: Frédéric Chapoton
Reviewer(s): Travis Scrimshaw
commit 014ccc31c4118b929bb46c0811331f828041aee4
Merge: 93cc706453 42b4b671c3
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:34 2024 +0200
gh-37673: upgrade msolve to 0.6.5
routine upgrade, dropping already applied patch
URL: https://github.com/sagemath/sage/pull/37673
Reported by: Dima Pasechnik
Reviewer(s): Dima Pasechnik, Marc Mezzarobba, Matthias Köppe
commit 93cc7064532b3456e5520833121e761078078576
Merge: cf431c8d40 f9ddc324b8
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:31 2024 +0200
gh-37672: src/sage/modular/quasimodform/ring.py: Fix pycodestyle warning
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URL: https://github.com/sagemath/sage/pull/37672
Reported by: Matthias Köppe
Reviewer(s): Frédéric Chapoton
commit cf431c8d40397205bb0f2e1f2843beec16788236
Merge: 2c71f81f0d 378ec74794
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:28 2024 +0200
gh-37671: pkgs/sagemath-standard: Support gpep517
From https://github.com/sagemath/sage/pull/37138#issuecomment-2018937633
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URL: https://github.com/sagemath/sage/pull/37671
Reported by: Matthias Köppe
Reviewer(s): François Bissey
commit 2c71f81f0d804932deb11f3d28eb6e7962593076
Merge: 5801382f06 b8757d814e
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:24 2024 +0200
gh-37668: Wrong results in is_isotopic method of the Link class for certain chiral link
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The following result is wrong, since `K10_67` is a chiral knot:
```
sage: L = KnotInfo.K10_67
....: L1 = L.link()
....: L1r = L.link().reverse()
....: L1.is_isotopic(L1r)
True
```
The problem is that the `get_knotinfo` method currently does not
distinguish between all four symmetry mutants of a chiral knot or link.
In the example, `get_knotinfo` detects both knots as *not mirrored* to
the symmetry mutant of `K10_67` recorded in the KnotInfo database, as
you can see from the verbose messages:
```
sage: set_verbose(1)
sage: L1.is_isotopic(L1r)
verbose 1 (4365: link.py, is_isotopic) KnotInfo other: KnotInfo.K10_67
mirrored False
True
```
The wrong conclusion in `is_isotopic` is that they must be isotopic.
The idea in this PR is to replace the boolean `mirrored` in the output
of `get_knotinfo` with the value of an enum representing all symmetry
mutants for an entry of the KnotInfo database. Of course, this requires
major revisions in the `get_knotinfo` and `is_isotopic` methods. The key
to this is a new local method `_knotinfo_matching_dict` that builds on
`_knotinfo_matching_list` and returns the matching list for all symmetry
mutants.
On the occasion of that revision, I also fix other wrong results for
example this one of a multi-component link which is not amphicheiral,
but reversible:
```
sage: L = KnotInfo.L6a2_0
sage: L1 = L.link()
sage: L2 = L.link(L.items.braid_notation)
sage: L1.is_isotopic(L2)
False
```
This bug is due to `get_knotinfo` returning the wrong mirror version for
`L1` concerning `L6a2_1`:
```
...
sage: L1.get_knotinfo(unique=False)
[(<KnotInfo.L6a2_0: 'L6a2{0}'>, False), (<KnotInfo.L6a2_1: 'L6a2{1}'>,
False)]
sage: L2.get_knotinfo(unique=False)
[(<KnotInfo.L6a2_0: 'L6a2{0}'>, False), (<KnotInfo.L6a2_1: 'L6a2{1}'>,
True)]
```
In addition to these fixes, improvements and corresponding adjustments,
I correct some document formatting.
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URL: https://github.com/sagemath/sage/pull/37668
Reported by: Sebastian Oehms
Reviewer(s): Sebastian Oehms, Travis Scrimshaw
commit 5801382f0638c7c8f50ae5a906b85306e5350fb5
Merge: cf365e5e51 bcc326d972
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:11 2024 +0200
gh-37667: Fix noexcept clauses (#37560)
In #36507 I added a lot of `noexcept` clauses guided by a warning which
is not quite right (see
https://github.com/cython/cython/pull/5999#issuecomment-1986868208).
A new warning in 3.0.9 shows the mistake (incorrectly added `noexcept`
clauses). This broke some doctests (#37560) and a workaround was
implemented for 10.3 (#37583) since we were too close to release.
This PR now does the proper fix, removing all the incorrect `noexcept`,
and also adding a few missing `noexcept`.
Note: if one tries this PR with cython <= 3.0.8 it seems it's wrong in
the sense that it will show 40k more warnings after the PR. These are
*incorrect* warnings.
If one uses cython 3.0.9 each of these 40k lines give a correct warning
before this PR and an incorrect warnings after the PR, and there is no
way to avoid 40k warnings.
To confirm this PR is a good one, one needs to use cython 3.0.9 +
https://github.com/cython/cython/pull/6087 or wait for cython 3.0.10. In
this case, the warnings are correct and one will get 40k warnings before
the PR and no warning after the PR.
The last commit reverts the workaround from #37583 so we don't silence
these warnings on `cython()` now that we have our own code right.
@vbraun: this is "almost trivial" but touches too many files. Could we
merge it in beta0 to avoid conflicts? I did this "kind of" automatically
and I've been testing it for two weeks in almost all my builds. The
changes made should not affect behaviour at all in the legacy mode we
are using cython.
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URL: https://github.com/sagemath/sage/pull/37667
Reported by: Gonzalo Tornaría
Reviewer(s): Gonzalo Tornaría, Matthias Köppe
commit cf365e5e51d30495f823ed928e0fe027166545d0
Merge: 59bf21efe7 a47b98b32e
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:08 2024 +0200
gh-37663: sage/rings/{complex,real}*: Untitlecase titles, add refs to libraries
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description below. -->
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example, "Fixes #12345". -->
This cleans up the table of contents
https://deploy-preview-37663--
sagemath.netlify.app/html/en/reference/rings_numerical/
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- Depends on #37406 (merged here to resolve merge conflict)
URL: https://github.com/sagemath/sage/pull/37663
Reported by: Matthias Köppe
Reviewer(s): Marc Mezzarobba
commit 59bf21efe755cac20496bb417285a7e3545bc790
Merge: 2fd04522f3 210c5d8389
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:06 2024 +0200
gh-37661: some cross-references btw doc of RR, RBF, ...
(mainly intended to make RBF and CBF, which are the most powerful
implementations for most purposes, more discoverable)
URL: https://github.com/sagemath/sage/pull/37661
Reported by: Marc Mezzarobba
Reviewer(s):
commit 2fd04522f3caaca5fff0f78f1f1dccc6c0027475
Merge: 03f81897de 16a5261134
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:02 2024 +0200
gh-37660: Fix e302 libs pyx
This is adding missing empty lines (pycodestyle E302) in pyx files in
the `modules` and `libs` folders.
Also some little tweak in code in the singular libs files.
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URL: https://github.com/sagemath/sage/pull/37660
Reported by: Frédéric Chapoton
Reviewer(s): David Coudert
commit 03f81897de2bf0aaf6b7fa82982b17251b0c9fd1
Merge: 81b4ddccd1 23c45b1d61
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:59 2024 +0200
gh-37659: fix ruff codes UP012 and UP023
scripted using `ruff` ; only two minor changes
see https://docs.astral.sh/ruff/rules/#pyupgrade-up
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URL: https://github.com/sagemath/sage/pull/37659
Reported by: Frédéric Chapoton
Reviewer(s): Matthias Köppe
commit 81b4ddccd1de963f7731661106e1e425efd2e76b
Merge: 74a82d7ce4 4fa6f09984
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:54 2024 +0200
gh-37655: Removed caching of determinant in LLL for the `NTL:LLL`-algorithm
The method previously computed the square root of the squared
determinant to cache, thus caching the absolute value of the determinant
instead of the determinant. Therefore we remove this caching completely,
which fixes #37236.
URL: https://github.com/sagemath/sage/pull/37655
Reported by: Sebastian A. Spindler
Reviewer(s): Vincent Delecroix
commit 74a82d7ce445d8d9e66595887e9fcdf40f838702
Merge: 34539cdb4b 51d423d5a2
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:52 2024 +0200
gh-37652: fix typos and no "Algebra" in the doc
This fixes a bunch of typos in the doc, and also rewrites one example to
use `Parent` instead of the auld `Algebra`
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URL: https://github.com/sagemath/sage/pull/37652
Reported by: Frédéric Chapoton
Reviewer(s): Matthias Köppe
commit 34539cdb4b65fbb8f34f738c15f41a800de25141
Merge: 7a5ba77a93 5f32f5f882
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:49 2024 +0200
gh-37651: use parent in asymptotic ring
trying to use the modern `Parent` and categories in the asymptotic ring,
instead of the auld `Algebra`
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URL: https://github.com/sagemath/sage/pull/37651
Reported by: Frédéric Chapoton
Reviewer(s): Marc Mezzarobba
commit 7a5ba77a93cef0ee7a44f4228070e48b890d2b73
Merge: d4ab336474 4fa36454b5
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:45 2024 +0200
gh-37640: Modified `.is_reduced()` of `binary_qf.py` to avoid square root computation
Adapted the checks in `.is_reduced()` to avoid the square root
computation, which fixes #37635. Furthermore added a non-singularity
check.
This adaption is based on the observation that $$|\sqrt{D} - 2 \cdot
|a|| < b < \sqrt{D}$$
if and only if $$b > 0, \ a \cdot c < 0 \text{ and } (a-c)^2 < D$$
are all satisfied simultaneously (where $D = b^2 - 4ac > 0$).
The above can be proven in a straightforward manner by taking squares
and square roots while making sure that the numbers being squared are
always positive, so that inequalities are preserved.
URL: https://github.com/sagemath/sage/pull/37640
Reported by: Sebastian A. Spindler
Reviewer(s): Lorenz Panny
commit d4ab336474b9f40b9e7f637c9b3ba6ac8bbc2135
Merge: 3c174ef6a6 bf0c3695cc
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:41 2024 +0200
gh-37639: add Legendre transform and suspension for lazy symmetric functions
This adds two useful functions, particularly important when working with
operads and Koszul duality.
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URL: https://github.com/sagemath/sage/pull/37639
Reported by: Frédéric Chapoton
Reviewer(s): Martin Rubey, Travis Scrimshaw
commit 3c174ef6a69d80e733dc7461b44fbc8b646ac30d
Merge: 6ab45f666b d7021096c4
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:38 2024 +0200
gh-37638: use strings as label in modular-decomposition trees
Fixing #37631
and adding a note saying that labels of rooted trees must be comparable
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URL: https://github.com/sagemath/sage/pull/37638
Reported by: Frédéric Chapoton
Reviewer(s): cyrilbouvier
commit 6ab45f666ba665ee9a0c517233830bafbea544b9
Merge: 8e26e27572 c4c26ee1bf
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:36 2024 +0200
gh-37637: Update jupyter-sphinx to version 0.5.3 and pin thebe to version 0.8.2
<!-- ^ Please provide a concise and informative title. -->
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description below. -->
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jupyter-sphinx that we are shipping was patched to use thebe@latest,
which is the cause of the current breakdown of the sage live doc.
The patch to jupyter-sphinx is partly based on
https://github.com/jupyter/jupyter-sphinx/pull/231
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URL: https://github.com/sagemath/sage/pull/37637
Reported by: Kwankyu Lee
Reviewer(s): Matthias Köppe
commit 8e26e27572073bc9f54839143f52d2d7e4c710e0
Merge: 13a555d970 af97e6da28
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:28 2024 +0200
gh-37634: The Glaisher-Franklin bijections on integer partitions
The Glaisher-Franklin bijections, for a positive integer $s$, map the
set of parts divisible by $s$ to the set of parts which occur at least
$s$ times, see https://www.findstat.org/MapsDatabase/Mp00312 for the
$s=2$ case.
This generalizes and streamlines the code from findstat.
URL: https://github.com/sagemath/sage/pull/37634
Reported by: Martin Rubey
Reviewer(s): Martin Rubey, Travis Scrimshaw
commit 13a555d970eefceddd20728c6a3275447713ea7e
Merge: 58e8c578fd d45422e64e
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:23 2024 +0200
gh-37606: Border matrix
<!-- ^ Please provide a concise and informative title. -->
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description below. -->
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to calculate 1 + 2". -->
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Plain TeX users may remember `\bordermatrix`. Here we implement this as
options of the `Matrix` class's `str` method.
```
sage: M = matrix([[1,2,3], [4,5,6], [7,8,9]])
sage: M.subdivide(None, 2)
sage: print(M.str(unicode=True,
....: top_border=['ab', 'cde', 'f'],
....: bottom_border=['*', '', ''],
....: left_border=[1, 10, 100],
....: right_border=['', ' <', '']))
ab cde f
1⎛ 1 2│ 3⎞
10⎜ 4 5│ 6⎟ <
100⎝ 7 8│ 9⎠
*
```
Follow-up PR: As the guiding application for this feature, we equip
finite-dimensional modules with basis with methods `_repr_matrix`,
`_ascii_art_matrix`, `_unicode_art_matrix` that can be used as in this
example:
```
sage: M = matrix(ZZ, [[1, 0, 0], [0, 1, 0]],
....: column_keys=['a', 'b', 'c'],
....: row_keys=['v', 'w']); M
Generic morphism:
From: Free module generated by {'a', 'b', 'c'} over
Integer Ring
To: Free module generated by {'v', 'w'} over Integer
Ring
sage: M._unicode_art_ = M._unicode_art_matrix
sage: unicode_art(M) #
indirect doctest
a b c
v⎛1 0 0⎞
w⎝0 1 0⎠
```
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URL: https://github.com/sagemath/sage/pull/37606
Reported by: Matthias Köppe
Reviewer(s): David Coudert, Matthias Köppe
commit 58e8c578fdc79d94dba5de30ae3a5ba6c08630ef
Merge: 294eed4041 c1d38c77d2
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:20 2024 +0200
gh-37563: trying a change in unique_representation
namely break the loop over `mro` once found what we want
I am not sure at all that this keeps the expected properties, but this
is more efficient..
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URL: https://github.com/sagemath/sage/pull/37563
Reported by: Frédéric Chapoton
Reviewer(s): Travis Scrimshaw
commit 294eed4041447cb7420462f9548bc9195e376565
Merge: 14da417689 def8e56c30
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:17 2024 +0200
gh-37546: Sphinx ext links for Sage source files
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description below. -->
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In the documentation, we can now write `` :sage_root:`src/setup.py` ``
or `` :sage_root:`src/doc/en/installation` ``, and it will be formatted
uniformly, and a link to the file in the repository will be created.
- Rebased version of #33756
Fixes #33756.
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URL: https://github.com/sagemath/sage/pull/37546
Reported by: Matthias Köppe
Reviewer(s): David Coudert, Kwankyu Lee
commit 14da417689b26c72b4369c8a352d3f8345a3c259
Merge: 59ced5e363 1e66857af1
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:13 2024 +0200
gh-37497: remove zombie code
We remove zombie code for solving linear systems over a finite field,
which was (likely accidentally) created in #23214, but leads to errors
when solving sparse linear equations over finite fields.
This does not quite fix the issue, because we now fall back to generic
code.
Fixes #28586
URL: https://github.com/sagemath/sage/pull/37497
Reported by: Martin Rubey
Reviewer(s): Matthias Köppe
commit 59ced5e363eef8f18c34b65fbde75f007015ee0f
Merge: fbaec798ee 6704b34380
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:09 2024 +0200
gh-37425: Remove mention of patchbot, remove 'make buildbot-python3'
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- Depends on https://github.com/sagemath/sage/pull/37421
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URL: https://github.com/sagemath/sage/pull/37425
Reported by: Matthias Köppe
Reviewer(s): Frédéric Chapoton
commit fbaec798ee1a0df0e9ded0dd2dd0811387cbb797
Merge: 7855be0849 cb4e7184b3
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:06 2024 +0200
gh-37391: Make installation of "wheel" packages less noisy
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Don't put issue numbers in there, do this in the PR body below.
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<!-- Describe your changes here in detail -->
Some care for `build/bin/sage-spkg`, reducing unhelpful verbosity. In
particular, for "wheel" packages (https://deploy-livedoc--
sagemath.netlify.app/html/en/developer/packaging#package-source-types),
there is no build step, so there is no point in talking about what C
compiler is in use.
Also saving a few lines of output (and making it clearer who does what)
by prefixing the output from the various `spkg-...` scripts.
Example:
```
$ make packaging-no-deps
[packaging-23.2] Using cached file /Users/mkoeppe/s/sage/sage-
rebasing/worktree-pristine/upstream/packaging-23.2-py3-none-any.whl
[packaging-23.2] Setting up build directory /Users/mkoeppe/s/sage/sage-
rebasing/worktree-pristine/local/var/lib/sage/venv-
python3.11/var/tmp/sage/build/packaging-23.2
[packaging-23.2] [spkg-piprm] Found existing installation: packaging
23.2
[packaging-23.2] [spkg-piprm] Uninstalling packaging-23.2:
[packaging-23.2] [spkg-piprm] Successfully uninstalled packaging-23.2
[packaging-23.2] Removing stamp file /Users/mkoeppe/s/sage/sage-
rebasing/worktree-pristine/local/var/lib/sage/venv-
python3.11/var/lib/sage/installed/packaging-23.2
[packaging-23.2] [spkg-install] Staged wheel file, staged
/Users/mkoeppe/s/sage/sage-rebasing/worktree-
pristine/local/var/lib/sage/venv-
python3.11/var/lib/sage/scripts/packaging/spkg-requirements.txt
[packaging-23.2] Moving package files from temporary location
/Users/mkoeppe/s/sage/sage-rebasing/worktree-
pristine/local/var/lib/sage/venv-
python3.11/var/tmp/sage/build/packaging-23.2/inst to
/Users/mkoeppe/s/sage/sage-rebasing/worktree-
pristine/local/var/lib/sage/venv-python3.11
[packaging-23.2] [spkg-pipinst] Using pip 23.3.…
jacksonwalters
added a commit
to jacksonwalters/sage
that referenced
this pull request
Apr 9, 2024
commit 1d08fd591fb1694aff33cf5047f890cb8bf3b0e4
Merge: 14a1e5c078 a03a19d0be
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Tue Apr 9 15:10:30 2024 -0400
Merge branch 'pr/37748' of https://github.com/jacksonwalters/sage into pr/37748
commit a03a19d0be7b13f6ed9d082ecdef692dfcfb100f
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Tue Apr 9 14:58:25 2024 -0400
Reapply "Squashed commit of the following:"
This reverts commit 794503ca9f61504c80874e26d7cc71a37de4debc.
commit 794503ca9f61504c80874e26d7cc71a37de4debc
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Tue Apr 9 14:56:20 2024 -0400
Revert "Squashed commit of the following:"
This reverts commit da28bff0c7bb201a2795bb8cc974df69239954ef.
commit da28bff0c7bb201a2795bb8cc974df69239954ef
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Tue Apr 9 14:46:40 2024 -0400
Squashed commit of the following:
commit a047ccfd4c4454411027afb9dd0981d0ae4a8293
Merge: cc1aa671e5 14a1e5c078
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Tue Apr 9 14:41:10 2024 -0400
Merge branch 'pr/37748' of https://github.com/jacksonwalters/sage into pr/37748
commit cc1aa671e549388cc5d325cce8893062125c52dd
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Tue Apr 9 14:39:37 2024 -0400
Squashed commit of the following:
commit 14a1e5c078d1684f751b9e7ef450f197e7bcf27f
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 23:01:35 2024 -0400
Update src/sage/combinat/symmetric_group_algebra.py
Good idea.
moved description from _dft_modular to dft docstring
remove doctest with p=3, n=3
Update src/sage/combinat/symmetric_group_algebra.py
Update src/sage/combinat/symmetric_group_algebra.py
Co-Authored-By: Travis Scrimshaw <clfrngrown@aol.com>
commit f3807cb141bae308906295f605939d4b2b205a5a
Merge: 9ad2152942 8ea5214695
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 20:12:53 2024 -0400
Merge branch 'develop' into pr/37748
commit 8ea5214695f742eccd34bd88600771b7121cdb9f
Author: Release Manager <release@sagemath.org>
Date: Tue Apr 9 00:29:19 2024 +0200
Updated SageMath version to 10.4.beta2
commit 9ad2152942819a55c20d80485ad8cd8925969c6c
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 13:38:43 2024 -0400
double backslash for math
commit 619a48dea00a0a67b8d4e542948200dc23e9589a
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 13:33:00 2024 -0400
add examples
commit 527ae2670dd3a37b25a192ab49dad7f4c16dd5aa
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 13:24:13 2024 -0400
form should default to None
if form is None, check if characteristic of field divides order of group. if so, it's the modular case, and we return the projection onto idempotents change-of-basis, i.e. the MFT. if not, use semi-normal form.
commit 488e931da94f4872047ff8e839edc4a0c99b163e
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 13:09:54 2024 -0400
missing parantheses
commit 7e96c904b6bc47d2108930c039b95a14155d425b
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 13:00:57 2024 -0400
Update src/sage/combinat/symmetric_group_algebra.py
Co-authored-by: Travis Scrimshaw <clfrngrown@aol.com>
commit cf27c64dff0b77c6cca162849ec923ae14f4920f
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 13:00:14 2024 -0400
Update src/sage/combinat/symmetric_group_algebra.py
I thought I could do this, don't know why I convinced myself I needed flatten.
Co-authored-by: Travis Scrimshaw <clfrngrown@aol.com>
commit 92699f42eba524047b09d527981dab2456802958
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 12:59:16 2024 -0400
Update src/sage/combinat/symmetric_group_algebra.py
Co-authored-by: Travis Scrimshaw <clfrngrown@aol.com>
commit 68f2ef140f91356f55290d100ad8a5282f19c206
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 12:58:30 2024 -0400
Update src/sage/combinat/symmetric_group_algebra.py
Co-authored-by: Travis Scrimshaw <clfrngrown@aol.com>
commit 618d5e1a8cb11006ef9fa6642e33f06d5728d6ae
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 12:57:18 2024 -0400
Update src/sage/combinat/symmetric_group_algebra.py
Co-authored-by: Travis Scrimshaw <clfrngrown@aol.com>
commit 04db911e3f6a08b3be1bf5c295e913a40ee8b28a
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 12:56:37 2024 -0400
Update src/sage/combinat/symmetric_group_algebra.py
I see, so "None" if the user doesn't specify, and we determine which form based on whether p|n!. Sounds good.
Co-authored-by: Travis Scrimshaw <clfrngrown@aol.com>
commit e86f79410ebda01b8a85598a5754f9c383336ae1
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 11:09:57 2024 -0400
add doctest to ensure issue 37751 is fixed
commit f8c64d16b3d1c7b3d338d9d2339ae2e284df3c58
Merge: aedd2f3927 3079e2d897
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 10:55:44 2024 -0400
Merge branch 'pr/37748' of https://github.com/jacksonwalters/sage into pr/37748
commit aedd2f3927aac05dceeb97bd484afa82557652a8
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 10:55:43 2024 -0400
remove multiplication stars
commit 3079e2d897396222b0f23784a4d07a40f25b3c1f
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 10:54:38 2024 -0400
Update src/sage/combinat/symmetric_group_algebra.py
Co-authored-by: grhkm21 <83517584+grhkm21@users.noreply.github.com>
commit b14565299a6f5a82e5fae5080de88b455ce696e5
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 10:51:59 2024 -0400
docstring lines are wrapped at 80 characters
ensure each line is less than 80 characters
commit e3fcc1f59c4668f88c184649c18627480365e646
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Mon Apr 8 10:24:51 2024 -0400
keep form argument
keep form since there is a one year deprecation warning before removing arguments. show deprecation warning when default seminormal form is called, but suggest modular form which works in all cases
commit 6d187b153b5b5c3e29fe07d9efe925e34bf5baa5
Merge: 551139c09f c8d260a6fe
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 23:34:58 2024 +0200
gh-37764: ECM-related tests fail after an incremental build
### TL;DR:
This is because setting the default ECMBIN=ecm is only done when using
the configure test, but not when skipping the configure test because the
spkg is already installed.
### Steps to reproduce:
* ecm is not installed in the base os
* Sage make distclean && make succeeeds
* Tests succeed
* re-running ./bootstrap && ./configure && make works
* Tests now fail with PermissionError: [Errno 13] Permission denied: ''
### Dependencies
See also:
* https://github.com/sagemath/sage/pull/37701
* https://github.com/sagemath/sage/pull/37011#issuecomment-2023089743
URL: https://github.com/sagemath/sage/pull/37764
Reported by: Volker Braun
Reviewer(s): Matthias Köppe
commit 71ad110e196d9f17934d030ce1c000e11b50fee8
Author: Jackson Walters <jacksonwalters@gmail.com>
Date: Sun Apr 7 19:57:42 2024 -0400
trigger GitHub actions
commit c8d260a6fe37cb0379690e57dab6fd2a3d5d8048
Author: Volker Braun <tarpit@vbraun.imap.cc>
Date: Sun Apr 7 22:13:11 2024 +0200
Update build/pkgs/ecm/spkg-configure.m4
Co-authored-by: Matthias Köppe <mkoeppe@math.ucdavis.edu>
commit fbf896681da3ad1fad6c164e4d5a7cf452ec2eec
Author: Volker Braun <tarpit@vbraun.imap.cc>
Date: Sun Apr 7 21:35:42 2024 +0200
Update build/pkgs/ecm/spkg-configure.m4
Co-authored-by: Matthias Köppe <mkoeppe@math.ucdavis.edu>
commit 6531f7e415230d62fecd0a38fd804081341a9f32
Author: Volker Braun <tarpit@vbraun.imap.cc>
Date: Sun Apr 7 21:35:38 2024 +0200
Update build/pkgs/ecm/spkg-configure.m4
Co-authored-by: Matthias Köppe <mkoeppe@math.ucdavis.edu>
commit af0e24286a62a06d85e1baf49d0dc8f624965e5c
Author: Volker Braun <vbraun.name@gmail.com>
Date: Sun Apr 7 19:17:37 2024 +0200
ECM-related tests fail after an incremental build
This is because setting the default ECMBIN=ecm is only done when using
the configure test, but not when skipping the configure test because
the spkg is already installed.
Steps to reproduce:
* ecm is not installed in the base os
* Sage make distclean && make succeeeds
* Tests succeed
* re-running ./bootstrap && ./configure && make works
* Tests now fail with PermissionError: [Errno 13] Permission denied: ''
See also:
* https://github.com/sagemath/sage/pull/37701
* https://github.com/sagemath/sage/pull/37011#issuecomment-2023089743
commit 551139c09f26a5da96b1187c3f0dd17b8d80ef84
Merge: 03be519274 547d502ed5
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:43 2024 +0200
gh-37763: Fix tolerance for scipy 1.13
After updating scipy to 1.13:
```
**********************************************************************
File "pkgs/sagemath-standard/build/lib.linux-x86_64-cpython-
312/sage/matrix/matrix_double_dense.pyx", line 3686, in
sage.matrix.matrix_double_dense.Matrix_double_dense.exp
Failed example:
A.exp() # tol 1.1e-14
# needs sage.symbolic
Expected:
[-19.614602953804912 + 12.517743846762578*I 3.7949636449582176 +
28.88379930658099*I]
[ -32.383580980922254 + 21.88423595789845*I 2.269633004093535 +
44.901324827684824*I]
Got:
[-19.61460295380496 + 12.517743846762578*I 3.7949636449581874 +
28.88379930658104*I]
[-32.38358098092232 + 21.884235957898436*I 2.2696330040934853 +
44.901324827684896*I]
Tolerance exceeded in 1 of 8:
2.269633004093535 vs 2.2696330040934853, tolerance 3e-14 > 1.1e-14
**********************************************************************
```
This PR raises the tolerance to `3e-14` to fix this.
### :memo: Checklist
- [x] The title is concise and informative.
- [x] The description explains in detail what this PR is about.
URL: https://github.com/sagemath/sage/pull/37763
Reported by: Gonzalo Tornaría
Reviewer(s): Antonio Rojas
commit 03be519274f1e3aa424ea729f406180a10df1498
Merge: 4d88e898e2 cd41d1e414
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:37 2024 +0200
gh-37755: src/sage/graphs/graph_decompositions/tdlib.pyx: Use -std=c++11
<!-- ^ Please provide a concise and informative title. -->
<!-- ^ Don't put issue numbers in the title, do this in the PR
description below. -->
<!-- ^ For example, instead of "Fixes #12345" use "Introduce new method
to calculate 1 + 2". -->
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example, "Fixes #12345". -->
This is needed with the current Xcode command line tools on macOS with
boost from homebrew.
Similar to
https://github.com/sagemath/sage/pull/37646#issuecomment-2017108199
### :memo: Checklist
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- [x] The title is concise and informative.
- [x] The description explains in detail what this PR is about.
- [x] I have linked a relevant issue or discussion.
- [ ] I have created tests covering the changes.
- [ ] I have updated the documentation accordingly.
### :hourglass: Dependencies
<!-- List all open PRs that this PR logically depends on. For example,
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<!-- - #12345: short description why this is a dependency -->
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URL: https://github.com/sagemath/sage/pull/37755
Reported by: Matthias Köppe
Reviewer(s): David Coudert
commit 4d88e898e203d9b7297d224f40d659c213701ccb
Merge: 9971cec642 6722976389
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:34 2024 +0200
gh-37753: Added rank check to doctest in `.gauss_on_polys`
Fixes #37732. Also removed assignment of vectors `v` in the same doctest
since they are not used.
URL: https://github.com/sagemath/sage/pull/37753
Reported by: Sebastian A. Spindler
Reviewer(s): Martin Rubey
commit 9971cec64239679ee00ee7b22415b98ed53fbbf6
Merge: 3df3305a64 80239bc925
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:31 2024 +0200
gh-37736: Reimplementing the Witt (Sym Func) change of basis, caches, and omega involution
<!-- ^ Please provide a concise and informative title. -->
<!-- ^ Don't put issue numbers in the title, do this in the PR
description below. -->
<!-- ^ For example, instead of "Fixes #12345" use "Introduce new method
to calculate 1 + 2". -->
<!-- v Describe your changes below in detail. -->
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<!-- v If this PR resolves an open issue, please link to it here. For
example, "Fixes #12345". -->
We reimplement the coercion from the Witt basis of symmetric functions
to the $h$, $e$, and $p$ bases and their inverses by using the
generating function identities and recursion for $w_n, h_n, e_n, p_n$
and the mulitplicative basis property for the general shape (in
particular, we attempt to minimize the number of multiplications and
maximize the use of the cache by recursively splitting the partition by
its smallest part). We cache the result using `@cached_method` instead
of custom classes. We also deprecate the `coerce_*` inputs.
We also take advantage that $\omega w_n = w_n$ when $n$ is odd to
compute the omega involution. This extends to a faster computation of
the antipode.
### :memo: Checklist
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- [x] The title is concise and informative.
- [x] The description explains in detail what this PR is about.
- [x] I have linked a relevant issue or discussion.
- [x] I have created tests covering the changes.
- [x] I have updated the documentation accordingly.
### :hourglass: Dependencies
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-->
<!-- - #12345: short description why this is a dependency -->
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URL: https://github.com/sagemath/sage/pull/37736
Reported by: Travis Scrimshaw
Reviewer(s): Darij Grinberg, Martin Rubey
commit 3df3305a6493f88ce86a1bc73e17c34ad01fbe33
Merge: 01333dfec1 ddcb3e45ca
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:27 2024 +0200
gh-37725: Fix typo/phrasing in README.md
<!-- ^ Please provide a concise and informative title. -->
<!-- ^ Don't put issue numbers in the title, do this in the PR
description below. -->
<!-- ^ For example, instead of "Fixes #12345" use "Introduce new method
to calculate 1 + 2". -->
<!-- v Describe your changes below in detail. -->
<!-- v Why is this change required? What problem does it solve? -->
<!-- v If this PR resolves an open issue, please link to it here. For
example, "Fixes #12345". -->
- Removed the phrase "It assumes that you have already cloned the git
repository" from the setup guide since the guide actually contains
instructions on cloning the repository
- Removed a random misplaced period
### :memo: Checklist
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- [x] The title is concise and informative.
- [x] The description explains in detail what this PR is about.
- [ ] I have linked a relevant issue or discussion.
- [ ] I have created tests covering the changes.
- [ ] I have updated the documentation accordingly.
### :hourglass: Dependencies
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URL: https://github.com/sagemath/sage/pull/37725
Reported by: Faisal
Reviewer(s): gmou3
commit 01333dfec1ae7a518260c0178d4a0b254b886157
Merge: bcbb58f10a 8378fe6fdd
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:24 2024 +0200
gh-37721: Renamed "ring" argument of matrix contructor to "base_ring"
<!-- ^ Please provide a concise and informative title. -->
<!-- ^ Don't put issue numbers in the title, do this in the PR
description below. -->
<!-- ^ For example, instead of "Fixes #12345" use "Introduce new method
to calculate 1 + 2". -->
<!-- v Describe your changes below in detail. -->
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<!-- v If this PR resolves an open issue, please link to it here. For
example, "Fixes #12345". -->
The matrix constructor used to accept ``ring`` as argument to specify a
the base ring of a matrix.
It now takes ``base_ring`` instead. ``ring`` is still accepted but
deprecated (I added a deprecation in the code).
This is for unification (``base_ring`` is what users expect from their
experience with other classes).
This solves @mkoeppe's issue #33380.
### :memo: Checklist
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- [x] The title is concise and informative.
- [x] The description explains in detail what this PR is about.
- [x] I have linked a relevant issue or discussion.
- [x] I have created tests covering the changes.
- [x] I have updated the documentation accordingly.
### :hourglass: Dependencies
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URL: https://github.com/sagemath/sage/pull/37721
Reported by: SandwichGouda
Reviewer(s): Matthias Köppe
commit bcbb58f10a840f43c1359934b85bfef9c143731c
Merge: 08d5d97336 9b3ddf95fd
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:21 2024 +0200
gh-37720: pkgs/sagemath-repl/pyproject.toml.m4: Declare extra 'sphinx'
<!-- ^ Please provide a concise and informative title. -->
<!-- ^ Don't put issue numbers in the title, do this in the PR
description below. -->
<!-- ^ For example, instead of "Fixes #12345" use "Introduce new method
to calculate 1 + 2". -->
<!-- v Describe your changes below in detail. -->
<!-- v Why is this change required? What problem does it solve? -->
<!-- v If this PR resolves an open issue, please link to it here. For
example, "Fixes #12345". -->
As discussed in
https://github.com/sagemath/sage/pull/37589#issuecomment-2030456264, the
Sage documentation system uses Sphinx to format the documentation in the
terminal, for example in the help system.
For the modularization project, a simple fallback for the case of Sphinx
not being present was added.
Here we declare the corresponding "extra" so that users can do `pip
install sagemath-repl[sphinx]`.
### :memo: Checklist
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- [x] The title is concise and informative.
- [x] The description explains in detail what this PR is about.
- [x] I have linked a relevant issue or discussion.
- [ ] I have created tests covering the changes.
- [ ] I have updated the documentation accordingly.
### :hourglass: Dependencies
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-->
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URL: https://github.com/sagemath/sage/pull/37720
Reported by: Matthias Köppe
Reviewer(s):
commit 08d5d97336d5cb87f4e9731b724b320e8cef771f
Merge: 253169ff7b 5a61d3c103
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:18 2024 +0200
gh-37712: src/tox.ini (rst): Add missing Sphinx roles
<!-- ^ Please provide a concise and informative title. -->
<!-- ^ Don't put issue numbers in the title, do this in the PR
description below. -->
<!-- ^ For example, instead of "Fixes #12345" use "Introduce new method
to calculate 1 + 2". -->
<!-- v Describe your changes below in detail. -->
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example, "Fixes #12345". -->
Fixes #37711
### :memo: Checklist
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- [x] The title is concise and informative.
- [ ] The description explains in detail what this PR is about.
- [x] I have linked a relevant issue or discussion.
- [ ] I have created tests covering the changes.
- [ ] I have updated the documentation accordingly.
### :hourglass: Dependencies
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-->
<!-- - #12345: short description why this is a dependency -->
<!-- - #34567: ... -->
URL: https://github.com/sagemath/sage/pull/37712
Reported by: Matthias Köppe
Reviewer(s): Frédéric Chapoton
commit 253169ff7b83df66d20846983ac9ce2982f3a18e
Merge: 35f34ee0f6 3dc65b5797
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:16 2024 +0200
gh-37707: Implement an iterator for absolute number fields
<!-- ^ Please provide a concise and informative title. -->
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description below. -->
<!-- ^ For example, instead of "Fixes #12345" use "Introduce new method
to calculate 1 + 2". -->
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example, "Fixes #12345". -->
We use the $\mathbb{Q}$ vector space structure. Although because of
#37706, we go through `cartesian_product`.
If there is an easy way to implement this in full generality (i.e., all
number fields), please let me know.
### :memo: Checklist
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- [x] The title is concise and informative.
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- [x] I have linked a relevant issue or discussion.
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- [x] I have updated the documentation accordingly.
### :hourglass: Dependencies
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<!-- - #34567: ... -->
URL: https://github.com/sagemath/sage/pull/37707
Reported by: Travis Scrimshaw
Reviewer(s): Matthias Köppe
commit 35f34ee0f66904d9f2766b646664ae67cedd3aae
Merge: 0a16c78b4e e077f1edf7
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:11 2024 +0200
gh-37703: Implement an is_nilpotent() method for matrices
<!-- ^ Please provide a concise and informative title. -->
<!-- ^ Don't put issue numbers in the title, do this in the PR
description below. -->
<!-- ^ For example, instead of "Fixes #12345" use "Introduce new method
to calculate 1 + 2". -->
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example, "Fixes #12345". -->
Checking if a matrix is nilpotent is a fundamental test that Sage is
(surprisingly) missing. We check this by using the char poly.
### :memo: Checklist
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- [x] The title is concise and informative.
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- [x] I have linked a relevant issue or discussion.
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- [x] I have updated the documentation accordingly.
### :hourglass: Dependencies
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<!-- - #34567: ... -->
URL: https://github.com/sagemath/sage/pull/37703
Reported by: Travis Scrimshaw
Reviewer(s): Frédéric Chapoton, Martin Rubey
commit 0a16c78b4e2b677ba30b198fdc781d38e595c9d8
Merge: 9d788cb197 7e8aa98fa6
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:04 2024 +0200
gh-37699: Add `approximate_closest_vector` to `IntegerLattice`, using Babai's nearest plane algorithm
This PR implements Babai's nearest plane algorithm to find vectors close
to a given vector in an integer lattice.
I would appreciate if someone could verify the bound stated in the
docstring, it is inferred from Babai's original paper but parameterized
to use the `delta` parameter of the LLL algorithm.
Ideas for improvements:
- The doctest is currently the same as for `closest_vector`, this could
be expanded
- The `delta` parameter for LLL needs to be kept track of by the user.
How "much" the basis has been reduced (i.e to how high a `delta` value)
could be kept track of by the class and if a further reduction is needed
for some given bound then it could be performed.
### :memo: Checklist
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- [x] The title is concise and informative.
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URL: https://github.com/sagemath/sage/pull/37699
Reported by: TheBlupper
Reviewer(s): grhkm21, TheBlupper
commit 9d788cb19732f9f750c6d5a25c28ccb958414112
Merge: 6925269840 d63ab2607e
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 14:00:02 2024 +0200
gh-37689: Fix changes.html in doc preview
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by changing the base doc url.
The base doc url is where the doc preview for the released version is
uploaded. It changed recently:
https://github.com/sagemath/sage/issues/34874#issuecomment-1870589626,
but we didn't fix accordingly here: [.ci/create-changes-
html.sh](https://github.com/sagemath/sage/blob/develop/.ci/create-
changes-html.sh)
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URL: https://github.com/sagemath/sage/pull/37689
Reported by: Kwankyu Lee
Reviewer(s):
commit 6925269840b81d3a1085ae900037e71dfd440c87
Merge: 12a003eddd 3b137b50a0
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:59 2024 +0200
gh-37688: typo
Small typo
URL: https://github.com/sagemath/sage/pull/37688
Reported by: Dennis Yurichev
Reviewer(s): Martin Rubey
commit 12a003eddd08bcac14c88becd82bf52af599fe6c
Merge: 3c9a67a2f0 6184336d73
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:56 2024 +0200
gh-37687: provide a construction functor using a single functor for families
We enable sage to find common parents also when symmetric functions are
involved. In particular, we provide a functorial construction that takes
a commutative (coefficient) ring and produces a (commutative) ring of
symmetric functions over this ring.
For Macdonald polynomials and other symmetric functions that involve
parameters we cheat a bit: the categories should actually be commutative
rings with distinguished elements (namely, the parameters). However,
having these is very likely overkill.
This is an alternative to #37220, relying on individual construction
functors instead of passing around strings, and #37686, which provides
an individual functor for each family.
URL: https://github.com/sagemath/sage/pull/37687
Reported by: Martin Rubey
Reviewer(s): Travis Scrimshaw
commit 3c9a67a2f0f8d42c1167f7fa192c70d29cdf6766
Merge: 1ab35e3a69 31645a4f35
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:53 2024 +0200
gh-37683: some shortcuts using bool
fixes suggested by `ruff --select=SIM210`
namely use `bool` for concision
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URL: https://github.com/sagemath/sage/pull/37683
Reported by: Frédéric Chapoton
Reviewer(s): Matthias Köppe, Travis Scrimshaw
commit 1ab35e3a696baf5a2fdd866a670c32611fa4a996
Merge: 654ed08b89 449864f0af
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:49 2024 +0200
gh-37680: a few more uses of "in Fields()"
Just replacing some tests by `R in Fields()` in some pyx files outside
the `rings` folder
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URL: https://github.com/sagemath/sage/pull/37680
Reported by: Frédéric Chapoton
Reviewer(s): Matthias Köppe
commit 654ed08b899e3a0bcd2d72a9ea66e5f1a96569a8
Merge: 042153b0d9 a8671aef33
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:44 2024 +0200
gh-37679: simplifications in symmetric_ideal.py
some simplifications in `symmetric_ideal`
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URL: https://github.com/sagemath/sage/pull/37679
Reported by: Frédéric Chapoton
Reviewer(s): Matthias Köppe
commit 042153b0d976f8ec7b7489c404a17084321e3e06
Merge: 0de7848873 5d4a91fa85
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:41 2024 +0200
gh-37677: some simplifications in moment-angle complex
a bunch of code details in the modified file
fixes #36217
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URL: https://github.com/sagemath/sage/pull/37677
Reported by: Frédéric Chapoton
Reviewer(s): Travis Scrimshaw
commit 0de7848873bcda21b916e13ad71dd0dbe6aa9ff0
Merge: 014ccc31c4 e0ef88414d
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:38 2024 +0200
gh-37674: some pep8 and ruff cleanups in modules/
some ruff and pep8 cleanup in the `modules` folder
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URL: https://github.com/sagemath/sage/pull/37674
Reported by: Frédéric Chapoton
Reviewer(s): Travis Scrimshaw
commit 014ccc31c4118b929bb46c0811331f828041aee4
Merge: 93cc706453 42b4b671c3
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:34 2024 +0200
gh-37673: upgrade msolve to 0.6.5
routine upgrade, dropping already applied patch
URL: https://github.com/sagemath/sage/pull/37673
Reported by: Dima Pasechnik
Reviewer(s): Dima Pasechnik, Marc Mezzarobba, Matthias Köppe
commit 93cc7064532b3456e5520833121e761078078576
Merge: cf431c8d40 f9ddc324b8
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:31 2024 +0200
gh-37672: src/sage/modular/quasimodform/ring.py: Fix pycodestyle warning
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URL: https://github.com/sagemath/sage/pull/37672
Reported by: Matthias Köppe
Reviewer(s): Frédéric Chapoton
commit cf431c8d40397205bb0f2e1f2843beec16788236
Merge: 2c71f81f0d 378ec74794
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:28 2024 +0200
gh-37671: pkgs/sagemath-standard: Support gpep517
From https://github.com/sagemath/sage/pull/37138#issuecomment-2018937633
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URL: https://github.com/sagemath/sage/pull/37671
Reported by: Matthias Köppe
Reviewer(s): François Bissey
commit 2c71f81f0d804932deb11f3d28eb6e7962593076
Merge: 5801382f06 b8757d814e
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:24 2024 +0200
gh-37668: Wrong results in is_isotopic method of the Link class for certain chiral link
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The following result is wrong, since `K10_67` is a chiral knot:
```
sage: L = KnotInfo.K10_67
....: L1 = L.link()
....: L1r = L.link().reverse()
....: L1.is_isotopic(L1r)
True
```
The problem is that the `get_knotinfo` method currently does not
distinguish between all four symmetry mutants of a chiral knot or link.
In the example, `get_knotinfo` detects both knots as *not mirrored* to
the symmetry mutant of `K10_67` recorded in the KnotInfo database, as
you can see from the verbose messages:
```
sage: set_verbose(1)
sage: L1.is_isotopic(L1r)
verbose 1 (4365: link.py, is_isotopic) KnotInfo other: KnotInfo.K10_67
mirrored False
True
```
The wrong conclusion in `is_isotopic` is that they must be isotopic.
The idea in this PR is to replace the boolean `mirrored` in the output
of `get_knotinfo` with the value of an enum representing all symmetry
mutants for an entry of the KnotInfo database. Of course, this requires
major revisions in the `get_knotinfo` and `is_isotopic` methods. The key
to this is a new local method `_knotinfo_matching_dict` that builds on
`_knotinfo_matching_list` and returns the matching list for all symmetry
mutants.
On the occasion of that revision, I also fix other wrong results for
example this one of a multi-component link which is not amphicheiral,
but reversible:
```
sage: L = KnotInfo.L6a2_0
sage: L1 = L.link()
sage: L2 = L.link(L.items.braid_notation)
sage: L1.is_isotopic(L2)
False
```
This bug is due to `get_knotinfo` returning the wrong mirror version for
`L1` concerning `L6a2_1`:
```
...
sage: L1.get_knotinfo(unique=False)
[(<KnotInfo.L6a2_0: 'L6a2{0}'>, False), (<KnotInfo.L6a2_1: 'L6a2{1}'>,
False)]
sage: L2.get_knotinfo(unique=False)
[(<KnotInfo.L6a2_0: 'L6a2{0}'>, False), (<KnotInfo.L6a2_1: 'L6a2{1}'>,
True)]
```
In addition to these fixes, improvements and corresponding adjustments,
I correct some document formatting.
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URL: https://github.com/sagemath/sage/pull/37668
Reported by: Sebastian Oehms
Reviewer(s): Sebastian Oehms, Travis Scrimshaw
commit 5801382f0638c7c8f50ae5a906b85306e5350fb5
Merge: cf365e5e51 bcc326d972
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:11 2024 +0200
gh-37667: Fix noexcept clauses (#37560)
In #36507 I added a lot of `noexcept` clauses guided by a warning which
is not quite right (see
https://github.com/cython/cython/pull/5999#issuecomment-1986868208).
A new warning in 3.0.9 shows the mistake (incorrectly added `noexcept`
clauses). This broke some doctests (#37560) and a workaround was
implemented for 10.3 (#37583) since we were too close to release.
This PR now does the proper fix, removing all the incorrect `noexcept`,
and also adding a few missing `noexcept`.
Note: if one tries this PR with cython <= 3.0.8 it seems it's wrong in
the sense that it will show 40k more warnings after the PR. These are
*incorrect* warnings.
If one uses cython 3.0.9 each of these 40k lines give a correct warning
before this PR and an incorrect warnings after the PR, and there is no
way to avoid 40k warnings.
To confirm this PR is a good one, one needs to use cython 3.0.9 +
https://github.com/cython/cython/pull/6087 or wait for cython 3.0.10. In
this case, the warnings are correct and one will get 40k warnings before
the PR and no warning after the PR.
The last commit reverts the workaround from #37583 so we don't silence
these warnings on `cython()` now that we have our own code right.
@vbraun: this is "almost trivial" but touches too many files. Could we
merge it in beta0 to avoid conflicts? I did this "kind of" automatically
and I've been testing it for two weeks in almost all my builds. The
changes made should not affect behaviour at all in the legacy mode we
are using cython.
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URL: https://github.com/sagemath/sage/pull/37667
Reported by: Gonzalo Tornaría
Reviewer(s): Gonzalo Tornaría, Matthias Köppe
commit cf365e5e51d30495f823ed928e0fe027166545d0
Merge: 59bf21efe7 a47b98b32e
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:08 2024 +0200
gh-37663: sage/rings/{complex,real}*: Untitlecase titles, add refs to libraries
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This cleans up the table of contents
https://deploy-preview-37663--
sagemath.netlify.app/html/en/reference/rings_numerical/
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- Depends on #37406 (merged here to resolve merge conflict)
URL: https://github.com/sagemath/sage/pull/37663
Reported by: Matthias Köppe
Reviewer(s): Marc Mezzarobba
commit 59bf21efe755cac20496bb417285a7e3545bc790
Merge: 2fd04522f3 210c5d8389
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:06 2024 +0200
gh-37661: some cross-references btw doc of RR, RBF, ...
(mainly intended to make RBF and CBF, which are the most powerful
implementations for most purposes, more discoverable)
URL: https://github.com/sagemath/sage/pull/37661
Reported by: Marc Mezzarobba
Reviewer(s):
commit 2fd04522f3caaca5fff0f78f1f1dccc6c0027475
Merge: 03f81897de 16a5261134
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:59:02 2024 +0200
gh-37660: Fix e302 libs pyx
This is adding missing empty lines (pycodestyle E302) in pyx files in
the `modules` and `libs` folders.
Also some little tweak in code in the singular libs files.
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URL: https://github.com/sagemath/sage/pull/37660
Reported by: Frédéric Chapoton
Reviewer(s): David Coudert
commit 03f81897de2bf0aaf6b7fa82982b17251b0c9fd1
Merge: 81b4ddccd1 23c45b1d61
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:59 2024 +0200
gh-37659: fix ruff codes UP012 and UP023
scripted using `ruff` ; only two minor changes
see https://docs.astral.sh/ruff/rules/#pyupgrade-up
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URL: https://github.com/sagemath/sage/pull/37659
Reported by: Frédéric Chapoton
Reviewer(s): Matthias Köppe
commit 81b4ddccd1de963f7731661106e1e425efd2e76b
Merge: 74a82d7ce4 4fa6f09984
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:54 2024 +0200
gh-37655: Removed caching of determinant in LLL for the `NTL:LLL`-algorithm
The method previously computed the square root of the squared
determinant to cache, thus caching the absolute value of the determinant
instead of the determinant. Therefore we remove this caching completely,
which fixes #37236.
URL: https://github.com/sagemath/sage/pull/37655
Reported by: Sebastian A. Spindler
Reviewer(s): Vincent Delecroix
commit 74a82d7ce445d8d9e66595887e9fcdf40f838702
Merge: 34539cdb4b 51d423d5a2
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:52 2024 +0200
gh-37652: fix typos and no "Algebra" in the doc
This fixes a bunch of typos in the doc, and also rewrites one example to
use `Parent` instead of the auld `Algebra`
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URL: https://github.com/sagemath/sage/pull/37652
Reported by: Frédéric Chapoton
Reviewer(s): Matthias Köppe
commit 34539cdb4b65fbb8f34f738c15f41a800de25141
Merge: 7a5ba77a93 5f32f5f882
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:49 2024 +0200
gh-37651: use parent in asymptotic ring
trying to use the modern `Parent` and categories in the asymptotic ring,
instead of the auld `Algebra`
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URL: https://github.com/sagemath/sage/pull/37651
Reported by: Frédéric Chapoton
Reviewer(s): Marc Mezzarobba
commit 7a5ba77a93cef0ee7a44f4228070e48b890d2b73
Merge: d4ab336474 4fa36454b5
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:45 2024 +0200
gh-37640: Modified `.is_reduced()` of `binary_qf.py` to avoid square root computation
Adapted the checks in `.is_reduced()` to avoid the square root
computation, which fixes #37635. Furthermore added a non-singularity
check.
This adaption is based on the observation that $$|\sqrt{D} - 2 \cdot
|a|| < b < \sqrt{D}$$
if and only if $$b > 0, \ a \cdot c < 0 \text{ and } (a-c)^2 < D$$
are all satisfied simultaneously (where $D = b^2 - 4ac > 0$).
The above can be proven in a straightforward manner by taking squares
and square roots while making sure that the numbers being squared are
always positive, so that inequalities are preserved.
URL: https://github.com/sagemath/sage/pull/37640
Reported by: Sebastian A. Spindler
Reviewer(s): Lorenz Panny
commit d4ab336474b9f40b9e7f637c9b3ba6ac8bbc2135
Merge: 3c174ef6a6 bf0c3695cc
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:41 2024 +0200
gh-37639: add Legendre transform and suspension for lazy symmetric functions
This adds two useful functions, particularly important when working with
operads and Koszul duality.
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URL: https://github.com/sagemath/sage/pull/37639
Reported by: Frédéric Chapoton
Reviewer(s): Martin Rubey, Travis Scrimshaw
commit 3c174ef6a69d80e733dc7461b44fbc8b646ac30d
Merge: 6ab45f666b d7021096c4
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:38 2024 +0200
gh-37638: use strings as label in modular-decomposition trees
Fixing #37631
and adding a note saying that labels of rooted trees must be comparable
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URL: https://github.com/sagemath/sage/pull/37638
Reported by: Frédéric Chapoton
Reviewer(s): cyrilbouvier
commit 6ab45f666ba665ee9a0c517233830bafbea544b9
Merge: 8e26e27572 c4c26ee1bf
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:36 2024 +0200
gh-37637: Update jupyter-sphinx to version 0.5.3 and pin thebe to version 0.8.2
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jupyter-sphinx that we are shipping was patched to use thebe@latest,
which is the cause of the current breakdown of the sage live doc.
The patch to jupyter-sphinx is partly based on
https://github.com/jupyter/jupyter-sphinx/pull/231
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URL: https://github.com/sagemath/sage/pull/37637
Reported by: Kwankyu Lee
Reviewer(s): Matthias Köppe
commit 8e26e27572073bc9f54839143f52d2d7e4c710e0
Merge: 13a555d970 af97e6da28
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:28 2024 +0200
gh-37634: The Glaisher-Franklin bijections on integer partitions
The Glaisher-Franklin bijections, for a positive integer $s$, map the
set of parts divisible by $s$ to the set of parts which occur at least
$s$ times, see https://www.findstat.org/MapsDatabase/Mp00312 for the
$s=2$ case.
This generalizes and streamlines the code from findstat.
URL: https://github.com/sagemath/sage/pull/37634
Reported by: Martin Rubey
Reviewer(s): Martin Rubey, Travis Scrimshaw
commit 13a555d970eefceddd20728c6a3275447713ea7e
Merge: 58e8c578fd d45422e64e
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:23 2024 +0200
gh-37606: Border matrix
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description below. -->
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Plain TeX users may remember `\bordermatrix`. Here we implement this as
options of the `Matrix` class's `str` method.
```
sage: M = matrix([[1,2,3], [4,5,6], [7,8,9]])
sage: M.subdivide(None, 2)
sage: print(M.str(unicode=True,
....: top_border=['ab', 'cde', 'f'],
....: bottom_border=['*', '', ''],
....: left_border=[1, 10, 100],
....: right_border=['', ' <', '']))
ab cde f
1⎛ 1 2│ 3⎞
10⎜ 4 5│ 6⎟ <
100⎝ 7 8│ 9⎠
*
```
Follow-up PR: As the guiding application for this feature, we equip
finite-dimensional modules with basis with methods `_repr_matrix`,
`_ascii_art_matrix`, `_unicode_art_matrix` that can be used as in this
example:
```
sage: M = matrix(ZZ, [[1, 0, 0], [0, 1, 0]],
....: column_keys=['a', 'b', 'c'],
....: row_keys=['v', 'w']); M
Generic morphism:
From: Free module generated by {'a', 'b', 'c'} over
Integer Ring
To: Free module generated by {'v', 'w'} over Integer
Ring
sage: M._unicode_art_ = M._unicode_art_matrix
sage: unicode_art(M) #
indirect doctest
a b c
v⎛1 0 0⎞
w⎝0 1 0⎠
```
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### :hourglass: Dependencies
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URL: https://github.com/sagemath/sage/pull/37606
Reported by: Matthias Köppe
Reviewer(s): David Coudert, Matthias Köppe
commit 58e8c578fdc79d94dba5de30ae3a5ba6c08630ef
Merge: 294eed4041 c1d38c77d2
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:20 2024 +0200
gh-37563: trying a change in unique_representation
namely break the loop over `mro` once found what we want
I am not sure at all that this keeps the expected properties, but this
is more efficient..
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URL: https://github.com/sagemath/sage/pull/37563
Reported by: Frédéric Chapoton
Reviewer(s): Travis Scrimshaw
commit 294eed4041447cb7420462f9548bc9195e376565
Merge: 14da417689 def8e56c30
Author: Release Manager <release@sagemath.org>
Date: Sun Apr 7 13:58:17 2024 +0200
gh-37546: Sphinx ext links for Sage source files
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example, "Fixes #12345". -->
In the documentation, we can now write `` :sage_root:`src/setup.py` ``
or `` :sage_root:`src/doc/en/installation` ``, and it will be formatted
uniformly, and a link to the file in the repository will be created.
- Rebased version of #33756
Fixes #33756.
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TL;DR:
This is because setting the default ECMBIN=ecm is only done when using the configure test, but not when skipping the configure test because the spkg is already installed.
Steps to reproduce:
Dependencies
See also: