Create caches for gin ecephys data and virtual env #156
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| name: Create caches for gin ecephys data and virtual env | |
| on: | |
| workflow_dispatch: | |
| push: # When someting is pushed into main this checks if caches need to re-created | |
| branches: | |
| - master | |
| schedule: | |
| - cron: "0 12 * * *" # Daily at noon UTC | |
| jobs: | |
| create-virtual-env-cache-if-missing: | |
| name: Caching virtual env | |
| runs-on: "ubuntu-latest" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Get current year-month | |
| id: date | |
| run: | | |
| echo "date=$(date +'%Y-%m')" >> $GITHUB_OUTPUT | |
| - name: Get current dependencies hash | |
| id: dependencies | |
| run: | | |
| echo "hash=${{hashFiles('**/pyproject.toml')}}" >> $GITHUB_OUTPUT | |
| - uses: actions/cache@v3 | |
| id: cache-venv | |
| with: | |
| path: ~/test_env | |
| key: ${{ runner.os }}-venv-${{ steps.dependencies.outputs.hash }}-${{ steps.date.outputs.date }} | |
| - name: Cache found? | |
| run: echo "Cache-hit == ${{steps.cache-venv.outputs.cache-hit == 'true'}}" | |
| - name: Create the virtual environment to be cached | |
| if: steps.cache-venv.outputs.cache-hit != 'true' | |
| run: | | |
| git config --global user.email "CI@example.com" | |
| git config --global user.name "CI Almighty" | |
| python -m venv ~/test_env # Environment used in the caching step | |
| source ~/test_env/bin/activate | |
| python -m pip install -U pip # Official recommended way | |
| # herdingspikes need numpy to installed first (!) | |
| pip install numpy==1.22 | |
| pip install -e .[test,extractors,full] | |
| create-data-cache-if-missing: | |
| name: Caching data env | |
| runs-on: "ubuntu-latest" | |
| steps: | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Get current hash (SHA) of the ephy_testing_data repo | |
| id: repo_hash | |
| run: | | |
| echo "dataset_hash=$(git ls-remote https://gin.g-node.org/NeuralEnsemble/ephy_testing_data.git HEAD | cut -f1)" | |
| echo "dataset_hash=$(git ls-remote https://gin.g-node.org/NeuralEnsemble/ephy_testing_data.git HEAD | cut -f1)" >> $GITHUB_OUTPUT | |
| - uses: actions/cache@v3 | |
| id: cache-datasets | |
| with: | |
| path: ~/spikeinterface_datasets | |
| key: ${{ runner.os }}-datasets-${{ steps.repo_hash.outputs.dataset_hash }} | |
| - name: Cache found? | |
| run: echo "Cache-hit == ${{steps.cache-datasets.outputs.cache-hit == 'true'}}" | |
| - name: Installing datalad and git-annex | |
| if: steps.cache-datasets.outputs.cache-hit != 'true' | |
| run: | | |
| git config --global user.email "CI@example.com" | |
| git config --global user.name "CI Almighty" | |
| python -m pip install -U pip # Official recommended way | |
| pip install datalad-installer | |
| datalad-installer --sudo ok git-annex --method datalad/packages | |
| pip install datalad | |
| git config --global filter.annex.process "git-annex filter-process" # recommended for efficiency | |
| - name: Download dataset | |
| if: steps.cache-datasets.outputs.cache-hit != 'true' | |
| run: | | |
| datalad install --recursive --get-data https://gin.g-node.org/NeuralEnsemble/ephy_testing_data | |
| - name: Move the downloaded data to the right directory | |
| if: steps.cache-datasets.outputs.cache-hit != 'true' | |
| run: | | |
| mkdir --parents --verbose ~/spikeinterface_datasets/ephy_testing_data/ | |
| mv --force ./ephy_testing_data ~/spikeinterface_datasets/ | |
| - name: Show size of the cache to assert data is downloaded | |
| run: | | |
| cd ~ | |
| pwd | |
| du -hs spikeinterface_datasets | |
| cd spikeinterface_datasets | |
| pwd | |
| ls -lh # Should show ephy_testing_data | |
| cd ephy_testing_data | |
| ls -lh |