Create caches for gin ecephys data and virtual env #231
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Create caches for gin ecephys data and virtual env | |
| on: | |
| workflow_dispatch: | |
| push: # When someting is pushed into main this checks if caches need to re-created | |
| branches: | |
| - main | |
| schedule: | |
| - cron: "0 12 * * *" # Daily at noon UTC | |
| jobs: | |
| create-virtual-env-cache-if-missing: | |
| name: Caching virtual env | |
| runs-on: "ubuntu-latest" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Get current year-month | |
| id: date | |
| run: | | |
| echo "date=$(date +'%Y-%m')" >> $GITHUB_OUTPUT | |
| - name: Get current dependencies hash | |
| id: dependencies | |
| run: | | |
| echo "hash=${{hashFiles('**/pyproject.toml')}}" >> $GITHUB_OUTPUT | |
| - uses: actions/cache@v3 | |
| id: cache-venv | |
| with: | |
| path: ${{ github.workspace }}/test_env | |
| key: ${{ runner.os }}-venv-${{ steps.dependencies.outputs.hash }}-${{ steps.date.outputs.date }} | |
| lookup-only: 'true' # Avoids downloading the data, saving behavior is not affected. | |
| - name: Cache found? | |
| run: echo "Cache-hit == ${{steps.cache-venv.outputs.cache-hit == 'true'}}" | |
| - name: Create the virtual environment to be cached | |
| if: steps.cache-venv.outputs.cache-hit != 'true' | |
| uses: ./.github/actions/build-test-environment | |
| create-gin-data-cache-if-missing: | |
| name: Caching data env | |
| runs-on: "ubuntu-latest" | |
| steps: | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Create the directory to store the data | |
| run: | | |
| mkdir --parents --verbose $HOME/spikeinterface_datasets/ephy_testing_data/ | |
| chmod -R 777 $HOME/spikeinterface_datasets | |
| ls -l $HOME/spikeinterface_datasets | |
| - name: Get current hash (SHA) of the ephy_testing_data repo | |
| id: repo_hash | |
| run: | | |
| echo "dataset_hash=$(git ls-remote https://gin.g-node.org/NeuralEnsemble/ephy_testing_data.git HEAD | cut -f1)" | |
| echo "dataset_hash=$(git ls-remote https://gin.g-node.org/NeuralEnsemble/ephy_testing_data.git HEAD | cut -f1)" >> $GITHUB_OUTPUT | |
| - uses: actions/cache@v3 | |
| id: cache-datasets | |
| with: | |
| path: ~/spikeinterface_datasets | |
| key: ${{ runner.os }}-datasets-${{ steps.repo_hash.outputs.dataset_hash }} | |
| lookup-only: 'true' # Avoids downloading the data, saving behavior is not affected. | |
| - name: Cache found? | |
| run: echo "Cache-hit == ${{steps.cache-datasets.outputs.cache-hit == 'true'}}" | |
| - name: Installing datalad and git-annex | |
| if: steps.cache-datasets.outputs.cache-hit != 'true' | |
| run: | | |
| git config --global user.email "CI@example.com" | |
| git config --global user.name "CI Almighty" | |
| python -m pip install -U pip # Official recommended way | |
| pip install datalad-installer | |
| datalad-installer --sudo ok git-annex --method datalad/packages | |
| pip install datalad | |
| git config --global filter.annex.process "git-annex filter-process" # recommended for efficiency | |
| - name: Download dataset | |
| if: steps.cache-datasets.outputs.cache-hit != 'true' | |
| run: | | |
| datalad install --recursive --get-data https://gin.g-node.org/NeuralEnsemble/ephy_testing_data | |
| - name: Move the downloaded data to the right directory | |
| if: steps.cache-datasets.outputs.cache-hit != 'true' | |
| run: | | |
| mv --force ./ephy_testing_data $HOME/spikeinterface_datasets/ | |
| - name: Show size of the cache to assert data is downloaded | |
| run: | | |
| cd $HOME | |
| pwd | |
| du -hs spikeinterface_datasets # Should show the size of ephy_testing_data | |
| cd spikeinterface_datasets | |
| pwd | |
| ls -lh # Should show ephy_testing_data | |
| cd ephy_testing_data | |
| ls -lh |