v0.3.1

What's Changed

• Assign taxon to metadata by @sanjaynagi in #114
• Implement a run information and run statistics notebook, update ag-vampir.bed by @sanjaynagi in #116
• fixes and improvements by @sanjaynagi in #117
• update docs and add example sample sheet by @sanjaynagi in #119
• Create _toc from _toc_skeleton in process_toc.ipynb by @sanjaynagi in #121
• add support for custom snpeff dbs by @sanjaynagi in #126
• Bug fixes by @sanjaynagi in #130
• add njt and diplotype clustering by @sanjaynagi in #132

Full Changelog: v0.3.0...v0.3.1

v0.3.0

What's Changed

• primer-rebalancing by @sanjaynagi in #101
• Added kdr origins notebook by @EricRLucas in #102
• Testing - use whole reference genome from Vectorbase by @sanjaynagi in #104
• genetic diversity by @sanjaynagi in #105
• sample-qc infrastructure by @sanjaynagi in #106
• update logo by @sanjaynagi in #109
• enable multiple cohort columns by @sanjaynagi in #111
• Improve allele frequencies by @sanjaynagi in #112

New Contributors

• @EricRLucas made their first contribution in #102

Full Changelog: v0.2.0...v0.3.0

v0.2.0

What's Changed

• Bug Fix - Made bwa index outputs explicit! by @sanjaynagi in #68
• Bug Fix - for childioexception error by @ChabbyTMD in #70
• Feature - MultiQC Fastp and Qualimap results integration. by @ChabbyTMD in #73
• Feature - add empty reads/references folders, and welcome message by @sanjaynagi in #76
• Feature - option to call whole amplicons and move qc analyses to results/qc by @sanjaynagi in #78
• Feature - Implement snpeff annotation, snp-df nb and process nbs by @sanjaynagi in #82
• Feature - metadata - .xlsx or .csv or .tsv input by @sanjaynagi in #85
• Feature - amplicon x sample read depth table by @sanjaynagi in #87
• Feature - allow fastq path input in metadata by @sanjaynagi in #91
• Feature - indels fix + add dsx to targets file by @sanjaynagi in #93
• Feature - species-id and ag-vampir/custom panel support by @sanjaynagi in #97
• Feature - Improve snp-dataframe-excel functions by @sanjaynagi in #100

Full Changelog: v0.1.0...v0.2.0

v0.1.0

A first release for AmpSeeker.

Jupyter book is working now with some QC and results modules :)