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fix ci, poetry install instead of pip #162

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fix ci, poetry install instead of pip

fix ci, poetry install instead of pip #162

Workflow file for this run

.github/workflows/github-action-anoexpress.yaml at f9047aa
name: Execute notebooks
on: [push]
jobs:
run-notebooks:
strategy:
fail-fast: true
matrix:
python-version: ['3.9', '3.11']
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Install poetry
run: pipx install poetry==1.8.3
- name: Setup python
uses: actions/setup-python@v5
with:
python-version: "3.12"
cache: "poetry"
- name: Install dependencies
run: poetry install
- run: python -m ipykernel install --user --name anoexpress
- run: papermill workflow/notebooks/plot-gene-expression.ipynb ci.ipynb -k anoexpress
- run: papermill workflow/notebooks/plot-families-expression.ipynb ci2.ipynb -k anoexpress
- run: papermill workflow/notebooks/expression-candidates.ipynb ci3.ipynb -k anoexpress
- run: papermill workflow/notebooks/enrichment.ipynb ci4.ipynb -k anoexpress
- run: papermill workflow/notebooks/utility-functions.ipynb ci5.ipynb -k anoexpress