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@sanjaynagi
sanjaynagi committed Sep 30, 2024
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10 changes: 5 additions & 5 deletions .github/workflows/github-action-anoexpress.yaml
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Expand Up @@ -25,8 +25,8 @@ jobs:
run: poetry install

- run: poetry run python -m ipykernel install --user --name anoexpress
- run: papermill workflow/notebooks/plot-gene-expression.ipynb ci.ipynb -k anoexpress
- run: papermill workflow/notebooks/plot-families-expression.ipynb ci2.ipynb -k anoexpress
- run: papermill workflow/notebooks/expression-candidates.ipynb ci3.ipynb -k anoexpress
- run: papermill workflow/notebooks/enrichment.ipynb ci4.ipynb -k anoexpress
- run: papermill workflow/notebooks/utility-functions.ipynb ci5.ipynb -k anoexpress
- run: poetry run papermill workflow/notebooks/plot-gene-expression.ipynb ci.ipynb -k anoexpress
- run: poetry run papermill workflow/notebooks/plot-families-expression.ipynb ci2.ipynb -k anoexpress
- run: poetry run papermill workflow/notebooks/expression-candidates.ipynb ci3.ipynb -k anoexpress
- run: poetry run papermill workflow/notebooks/enrichment.ipynb ci4.ipynb -k anoexpress
- run: poetry run papermill workflow/notebooks/utility-functions.ipynb ci5.ipynb -k anoexpress

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