diff --git a/.github/workflows/github-action-anoexpress.yaml b/.github/workflows/github-action-anoexpress.yaml index 62a7ae2..984bdeb 100644 --- a/.github/workflows/github-action-anoexpress.yaml +++ b/.github/workflows/github-action-anoexpress.yaml @@ -25,8 +25,8 @@ jobs: run: poetry install - run: poetry run python -m ipykernel install --user --name anoexpress - - run: papermill workflow/notebooks/plot-gene-expression.ipynb ci.ipynb -k anoexpress - - run: papermill workflow/notebooks/plot-families-expression.ipynb ci2.ipynb -k anoexpress - - run: papermill workflow/notebooks/expression-candidates.ipynb ci3.ipynb -k anoexpress - - run: papermill workflow/notebooks/enrichment.ipynb ci4.ipynb -k anoexpress - - run: papermill workflow/notebooks/utility-functions.ipynb ci5.ipynb -k anoexpress + - run: poetry run papermill workflow/notebooks/plot-gene-expression.ipynb ci.ipynb -k anoexpress + - run: poetry run papermill workflow/notebooks/plot-families-expression.ipynb ci2.ipynb -k anoexpress + - run: poetry run papermill workflow/notebooks/expression-candidates.ipynb ci3.ipynb -k anoexpress + - run: poetry run papermill workflow/notebooks/enrichment.ipynb ci4.ipynb -k anoexpress + - run: poetry run papermill workflow/notebooks/utility-functions.ipynb ci5.ipynb -k anoexpress