Update documentation

_sources/notebooks/data_access.ipynb

@@ -0,0 +1,46 @@
+{
+ "cells": [
+  {
+   "attachments": {},
+   "cell_type": "markdown",
+   "id": "cce4eedb",
+   "metadata": {},
+   "source": [
+    "# Data Access\n",
+    "\n",
+    "## Accessing MalariaGEN Vector Observatory Data\n",
+    "\n",
+    "AnoPrimer relies on the malariagen_data package to access genetic variation data from wild whole-genome sequenced specimens of *An. gambiae* and *An. funestus*. Recently, the access process for the MalariaGEN Vector Observatory data has been updated. \n",
+    "\n",
+    "If using AnoPrimer within Google Colab, you will be asked to sign-in with your malariagen_data associated credentials. If using AnoPrimer elsewhere, you will need to set up your credentials as described in the [malariagen_data documentation](https://malariagen.github.io/vector-data/vobs/vobs-data-access.html).\n",
+    "\n"
+   ]
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3 (ipykernel)",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.6.9 (default, Nov 25 2022, 14:10:45) \n[GCC 8.4.0]"
+  },
+  "vscode": {
+   "interpreter": {
+    "hash": "31f2aee4e71d21fbe5cf8b01ff0e069b9275f58929596ceb00d14d90e3e16cd6"
+   }
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}

genindex.html

@@ -190,6 +190,7 @@
 <ul class="nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="notebooks/api.html">AnoPrimer API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="notebooks/notebooks.html">Notebooks</a></li>
+<li class="toctree-l1"><a class="reference internal" href="notebooks/data_access.html">Data Access</a></li>
 <li class="toctree-l1"><a class="reference internal" href="notebooks/troubleshooting_contributing.html">Troubleshooting</a></li>
 
 </ul>

landing-page.html

@@ -192,6 +192,7 @@
 <ul class="nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="notebooks/api.html">AnoPrimer API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="notebooks/notebooks.html">Notebooks</a></li>
+<li class="toctree-l1"><a class="reference internal" href="notebooks/data_access.html">Data Access</a></li>
 <li class="toctree-l1"><a class="reference internal" href="notebooks/troubleshooting_contributing.html">Troubleshooting</a></li>
 
 </ul>
@@ -398,6 +399,7 @@ <h1>AnoPrimer<a class="headerlink" href="#anoprimer" title="Permalink to this he
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="notebooks/api.html">AnoPrimer API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="notebooks/notebooks.html">Notebooks</a></li>
+<li class="toctree-l1"><a class="reference internal" href="notebooks/data_access.html">Data Access</a></li>
 <li class="toctree-l1"><a class="reference internal" href="notebooks/troubleshooting_contributing.html">Troubleshooting</a></li>
 <li class="toctree-l1"><a class="reference internal" href="notebooks/troubleshooting_contributing.html#contributing">Contributing</a></li>
 </ul>

notebooks/api.html

@@ -193,6 +193,7 @@
 <ul class="current nav bd-sidenav">
 <li class="toctree-l1 current active"><a class="current reference internal" href="#">AnoPrimer API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="notebooks.html">Notebooks</a></li>
+<li class="toctree-l1"><a class="reference internal" href="data_access.html">Data Access</a></li>
 <li class="toctree-l1"><a class="reference internal" href="troubleshooting_contributing.html">Troubleshooting</a></li>
 
 </ul>