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fix plot
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sanjaynagi committed Sep 27, 2024
1 parent 5b45afd commit 870d6c8
Showing 1 changed file with 5 additions and 2 deletions.
7 changes: 5 additions & 2 deletions AnoPrimer/evaluate.py
Original file line number Diff line number Diff line change
Expand Up @@ -248,9 +248,10 @@ def plot_primer_locs(
# Plot exons, genes, primer spans
self._plot_exons(ax, locgff, exon_id_col)
self._plot_genes(ax, genegff, min_, max_)
self._plot_primers(ax, oligos)
handles = self._plot_primers(ax, oligos)

# Add legend and save if out_dir is provided
plt.legend(handles=ax.get_legend_handles_labels()[0], loc=legend_loc)
plt.legend(handles=handles, loc=legend_loc)
if out_dir:
fig.savefig(
f"{out_dir}/{assay_name}_primer_locs.png", dpi=300, bbox_inches="tight"
Expand Down Expand Up @@ -396,6 +397,8 @@ def _plot_primers(self, ax, oligos):
patch = patches.Patch(color=pal[pair], label=f"pair {pair}")
handles.append(patch)

return handles

def gget_blat_genome(self, assembly="anoGam3"):
"""
Align primers to the genome using BLAT.
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