refactor AnoPrimer #47
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CI is failing due to google auth. I have run the tests locally and they pass. Merging. |
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Addresses #46
In this PR, I reorganise AnoPrimer into three scripts, design.py, utils.py, and evaluate.py.
I have added a results class, AnoPrimerResults, which contains methods for evaluating primers that have been designed, for example, interrogating ag3/af1, plotting primer locations, and using gget/blat.
I have edited the notebooks, they are much tidier now. Generally the usage looks much neater. I have also added a function to summarise the ag3/af1 sample sets available.
This will be AnoPrimer release 2.0, given the breaking changes