Fistula-Segmentation

Segmenting fistulae from abdominal CT scans

** Written during/after our meeting on 8/6 **

To train:

• edit /config/my_config.py file
• activate conda environment
• move to root directory of the project (cd /my/path/to/Fistula-Segmentation)
• run python scripts/train.py config/my_config

To deploy:

• TODO: create deployment script that takes DICOM(?)
• create script that instantiates network architecture, loads weights, takes in image argument, and passes that to model