From e5a5d438d65499f789aa0b8141f3ee746afcc07f Mon Sep 17 00:00:00 2001
From: Helge <47348963+HJZollner@users.noreply.github.com>
Date: Sun, 19 May 2024 09:45:17 +0200
Subject: [PATCH] [BUG] - Load/Process crash for phantom data -
 osp_combineCoils/osp_PhantomReferencing

- added correct ref flags during coil combination
- fixed function call for referencing of phantom data
---
 process/osp_PhantomReferencing.m | 2 +-
 process/osp_combineCoils.m       | 1 +
 2 files changed, 2 insertions(+), 1 deletion(-)

diff --git a/process/osp_PhantomReferencing.m b/process/osp_PhantomReferencing.m
index f0f20952..4ac0a160 100644
--- a/process/osp_PhantomReferencing.m
+++ b/process/osp_PhantomReferencing.m
@@ -74,7 +74,7 @@
     [refShift, refFWHM] = osp_XReferencing(dataToFit,[3.03 3.22],[1 1],[1.85 4.2]);
     if abs(refShift) > 10 % This a huge shift. Most likley wrong and we will try it again with tNAA only
         refSinglets=[2.01];
-        [refShift, refFWHM] = osp_XReferencing(raw,2.01,1,[1.85 4.2]);% determine frequency shift
+        [refShift, refFWHM] = osp_XReferencing(dataToFit,2.01,1,[1.85 4.2]);% determine frequency shift
     end
 elseif (best_ix==1 && best_shift<0.08) || (nearest(1)<0.03)
     % found a close match for a 0ppm reference, use it
diff --git a/process/osp_combineCoils.m b/process/osp_combineCoils.m
index e9fb6a9a..d964104b 100644
--- a/process/osp_combineCoils.m
+++ b/process/osp_combineCoils.m
@@ -225,6 +225,7 @@
             cweights.ref        = 'raw';
             raw_comb            = op_addrcvrs(MRSCont.raw_uncomb{metab_ll,kk},1,'h',cweights);
             cweights            = op_getcoilcombos(MRSCont.raw_ref_uncomb{ref_ll,kk},1,'h');
+            cweights.ref        = 'raw_ref';
             raw_ref_comb        = op_addrcvrs(MRSCont.raw_ref_uncomb{ref_ll,kk},1,'h',cweights);
             if MRSCont.flags.isUnEdited
                 raw_comb.flags.isUnEdited = 1;