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Add section on automation/workflows/pipelines #52

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minrk opened this issue May 1, 2024 · 0 comments
Open

Add section on automation/workflows/pipelines #52

minrk opened this issue May 1, 2024 · 0 comments

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@minrk
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minrk commented May 1, 2024

It's worth adding a section on using pipeline/workflow/automation tools

We have an example, but could use more discussion of:

  • why use these patterns (repeatability, verification, ease of modifying intermediate steps, etc.)
  • considerations when automating steps
  • what tools exist (e.g. GHA, snakemake, plain scripts are often just fine)
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