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<section id="install-scikit-bio">
<h1>Install scikit-bio<a class="headerlink" href="#install-scikit-bio" title="Link to this heading">#</a></h1>
<section id="python">
<h2>Python<a class="headerlink" href="#python" title="Link to this heading">#</a></h2>
<p>scikit-bio requires <a class="reference external" href="https://www.python.org/">Python</a> 3.8 or later installed in your system.</p>
</section>
<section id="conda">
<h2>Conda<a class="headerlink" href="#conda" title="Link to this heading">#</a></h2>
<p>The recommended way to install scikit-bio is via the <a class="reference external" href="https://docs.conda.io/">Conda</a> package manager. The latest release of scikit-bio is distributed via the <a class="reference external" href="https://conda-forge.org/">conda-forge</a> channel. You can install it via the following command:</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">conda</span> <span class="n">install</span> <span class="o">-</span><span class="n">c</span> <span class="n">conda</span><span class="o">-</span><span class="n">forge</span> <span class="n">scikit</span><span class="o">-</span><span class="n">bio</span>
</pre></div>
</div>
<p>Other channels such as anaconda and bioconda also host scikit-bio, which however may or may not be the up-to-date version.</p>
</section>
<section id="pypi">
<h2>PyPI<a class="headerlink" href="#pypi" title="Link to this heading">#</a></h2>
<p>Alternatively, the latest release of scikit-bio can be installed from <a class="reference external" href="https://pypi.org/">PyPI</a>:</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">pip</span> <span class="n">install</span> <span class="n">scikit</span><span class="o">-</span><span class="n">bio</span>
</pre></div>
</div>
</section>
<section id="third-party">
<h2>Third-party<a class="headerlink" href="#third-party" title="Link to this heading">#</a></h2>
<p>scikit-bio is available as third-party packages from software repositories for multiple Linux/BSD distributions. However, these packages may or may not be the latest version. The scikit-bio development team is not involved in the maintenance of these packages.</p>
<p>For example, users of Debian-based Linux distributions (such as Ubuntu and Linux Mint) may install scikit-bio using:</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">sudo</span> <span class="n">apt</span> <span class="n">install</span> <span class="n">python3</span><span class="o">-</span><span class="n">skbio</span> <span class="n">python</span><span class="o">-</span><span class="n">skbio</span><span class="o">-</span><span class="n">doc</span>
</pre></div>
</div>
<p>Users of Arch Linux or variants (such as Manjaro) may install scikit-bio from AUR:</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">yay</span> <span class="o">-</span><span class="n">S</span> <span class="n">python</span><span class="o">-</span><span class="n">scikit</span><span class="o">-</span><span class="n">bio</span>
</pre></div>
</div>
</section>
<section id="nightly-build">
<h2>Nightly build<a class="headerlink" href="#nightly-build" title="Link to this heading">#</a></h2>
<p>scikit-bio is undergoing expansion, with many new features being introduced. You are welcome to try these features by installing the current development version from <a class="extlink-repo github reference external" href="https://github.com/scikit-bio/scikit-bio/GitHub repo">scikit-bio/scikit-bio</a>:</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">pip</span> <span class="n">install</span> <span class="n">git</span><span class="o">+</span><span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="n">scikit</span><span class="o">-</span><span class="n">bio</span><span class="o">/</span><span class="n">scikit</span><span class="o">-</span><span class="n">bio</span><span class="o">.</span><span class="n">git</span>
</pre></div>
</div>
<p>Alternatively, you may download the repository, extract, and execute:</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">python</span> <span class="n">setup</span><span class="o">.</span><span class="n">py</span> <span class="n">install</span>
</pre></div>
</div>
<p>However, be cautious that the new functionality may not be stable and could be changed in the next formal release. It is not recommended to deploy the development version in a production environment.</p>
</section>
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