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Resample images to desired resolution #85

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merged 9 commits into from
Nov 15, 2020
Merged

Resample images to desired resolution #85

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49d5adf
resample t2w images to 1x1x1mm
PaulBautin Oct 16, 2020
8e3012e
resample t2w images manual segmentation to 1x1x1mm
PaulBautin Oct 16, 2020
0322ce6
update config_sct_run_batch for compute canada
PaulBautin Oct 16, 2020
d5a9d2e
Merge branch 'master' of https://github.com/sct-pipeline/csa-atrophy …
PaulBautin Nov 10, 2020
482a704
- pull from master
PaulBautin Nov 10, 2020
e260200
- remove local config
PaulBautin Nov 10, 2020
6104cf5
- rename config_script_t2.yml config_script.yml
PaulBautin Nov 15, 2020
1c3c906
- update config_sct_run_batch.yml
PaulBautin Nov 15, 2020
bb4e11f
Improve config_script.yml comments
PaulBautin Nov 15, 2020
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2 changes: 1 addition & 1 deletion config_sct_run_batch.yml
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
# config file for sct_run_batch
path_data: /scratch/pabaua/data-multi-subject-p
path_output: /scratch/pabaua/results_csa_t2_2
path_output: /scratch/pabaua/results_csa_t2_3
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why these changes? they are local (ie specific to your config)

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It is to keep track of the configs i used when i run jobs on compute canada. I will not merge this into master. In the future i will fork the repo for these kinds of PRs.

script: /home/pabaua/csa-atrophy/process_data.sh
script_args: /home/pabaua/csa-atrophy/config_script_t2.yml
jobs: -1
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