r20241105

Description

Update pipeline for contrast-agnostic segmentation for ISMRM 2025 submission

What's Changed

• CSA-atrophy pipeline scheme by @PaulBautin in #84
• Refactoring of affine_transfo by @PaulBautin in #82
• Crop around transformed segmentation by @PaulBautin in #89
• Resample images to desired resolution by @PaulBautin in #85
• Remove non-cropped transformed images by @PaulBautin in #97
• Increase the dilation used for cropping by @PaulBautin in #94
• Added graph showing intra-subject variability (COV) as a function of atrophy estimation error by @PaulBautin in #87
• Retrieve manual segmentations by @PaulBautin in #99
• Merge final graph to branch for contrast-agnostic by @sandrinebedard in #109

New Contributors

• @sandrinebedard made their first contribution in #109

Full Changelog: v1.0...r20241105

csa-atrophy v1.0

First release on T2w data.
Results from Compute Canada run on dataset https://github.com/spine-generic/data-multi-subject/releases/tag/r20200907