Merge pull request #6 from sct-pipeline/af/remove_sub-config

Fix select data
sct-pipeline · Dec 20, 2021 · ae763f1 · ae763f1
2 parents b13866a + a876d8a
commit ae763f1
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Showing 2 changed files with 1 addition and 9 deletions.
diff --git a/process_data.sh b/process_data.sh
@@ -109,7 +109,7 @@ segment_gm_if_does_not_exist(){
 select_subject_data(){
   arg1=$1
   arg2=$2
-  CONTRAST_CONFIG="$(cat $PATH_DATA/sub-config.yml | shyaml get-value subjects.$1.$2 '')"
+  CONTRAST_CONFIG="$(cat $PATH_DATA/include.yml | shyaml get-value subjects.$1.$2 '')"
   # echo Please enter the path of the subjects yaml
   # read path_subjects_yaml
 }

diff --git a/sub-config.yml b/sub-config.yml