Merge pull request #7 from sct-pipeline/af/add_requirements

Add requirements
sct-pipeline · Dec 21, 2021 · d196de8 · d196de8
2 parents ae763f1 + 0674396
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diff --git a/README.md b/README.md
@@ -21,3 +21,9 @@ The main steps involve:
 - QC analysis, manual correction of spinal cord masks and vertebral labeling
 - Re-run analysis with corrected masks
 - Aggregate results into CSV file
+
+How to use:
+```
+pip install -r requirements.txt
+sct_run_batch -jobs -1 -path-data ~/data/levin-stroke -path-output ~/levin_results/ -script ~/code/levin-stroke/process_data.sh
+```
diff --git a/requirements.txt b/requirements.txt
@@ -0,0 +1 @@
+shyaml