diff --git a/README.md b/README.md index d919376..68e4f09 100644 --- a/README.md +++ b/README.md @@ -21,3 +21,9 @@ The main steps involve: - QC analysis, manual correction of spinal cord masks and vertebral labeling - Re-run analysis with corrected masks - Aggregate results into CSV file + +How to use: +``` +pip install -r requirements.txt +sct_run_batch -jobs -1 -path-data ~/data/levin-stroke -path-output ~/levin_results/ -script ~/code/levin-stroke/process_data.sh +``` diff --git a/requirements.txt b/requirements.txt new file mode 100644 index 0000000..4fb6bfa --- /dev/null +++ b/requirements.txt @@ -0,0 +1 @@ +shyaml