From 067439637eef44dede7263c755963713a985a31a Mon Sep 17 00:00:00 2001
From: Alexandru Foias <afoias@polymtl.ca>
Date: Mon, 20 Dec 2021 12:52:23 -0500
Subject: [PATCH] add requirements

---
 README.md        | 6 ++++++
 requirements.txt | 1 +
 2 files changed, 7 insertions(+)
 create mode 100644 requirements.txt

diff --git a/README.md b/README.md
index d919376..68e4f09 100644
--- a/README.md
+++ b/README.md
@@ -21,3 +21,9 @@ The main steps involve:
 - QC analysis, manual correction of spinal cord masks and vertebral labeling
 - Re-run analysis with corrected masks
 - Aggregate results into CSV file
+
+How to use:
+```
+pip install -r requirements.txt
+sct_run_batch -jobs -1 -path-data ~/data/levin-stroke -path-output ~/levin_results/ -script ~/code/levin-stroke/process_data.sh
+```
diff --git a/requirements.txt b/requirements.txt
new file mode 100644
index 0000000..4fb6bfa
--- /dev/null
+++ b/requirements.txt
@@ -0,0 +1 @@
+shyaml