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Cannot reproduce trajectory inference tutorial #74

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OXPHOS opened this issue Aug 16, 2023 · 0 comments
Open

Cannot reproduce trajectory inference tutorial #74

OXPHOS opened this issue Aug 16, 2023 · 0 comments
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@OXPHOS
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OXPHOS commented Aug 16, 2023

Hi there,

I downloaded and ran the trajectory inference Jupyter notebook. I could run smoothly, but I cannot get the plot where cells are overlayed to the trajectory.

(As you can see, the upper image is fine, but the bottoms are wrong.)
example

The results in tutorial are:
example2

I didn't make any change to the code.

I am using scanpy 1.9.3. Any suggestions?

Thanks a lot!

@flying-sheep flying-sheep added the bug Something isn't working label Jan 22, 2024
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