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I downloaded and ran the trajectory inference Jupyter notebook. I could run smoothly, but I cannot get the plot where cells are overlayed to the trajectory.
(As you can see, the upper image is fine, but the bottoms are wrong.)
Hi there,
I downloaded and ran the trajectory inference Jupyter notebook. I could run smoothly, but I cannot get the plot where cells are overlayed to the trajectory.
(As you can see, the upper image is fine, but the bottoms are wrong.)
The results in tutorial are:
I didn't make any change to the code.
I am using scanpy 1.9.3. Any suggestions?
Thanks a lot!
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