Update run_notebook_macos.yaml

scverse · Dec 19, 2024 · a8e3a43 · a8e3a43
1 parent 3b4b5ae
commit a8e3a43
Showing 1 changed file with 9 additions and 9 deletions.
diff --git a/.github/workflows/run_notebook_macos.yaml b/.github/workflows/run_notebook_macos.yaml
@@ -33,19 +33,19 @@ jobs:
           source ~/.bash_profile
           conda activate scvi
 
-      # - name: Install dependencies
-      #   run: |
-      #     python -m pip install --upgrade pip wheel uv
-      #     python -m pip install "scvi-tools[tests]"
-      #     python -m pip install jax-metal
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip wheel uv
+          python -m pip install "scvi-tools[tests]"
+          python -m pip install jax-metal
 
-      # - name: Install Python kernel
-      #   run: |
-      #     python -m ipykernel install --user
+      - name: Install Python kernel
+        run: |
+          python -m ipykernel install --user
 
       - name: Run notebook
         run: |
-          python -m jupyter nbconvert --execute --inplace ${{ inputs.notebook }} --gpus all
+          python -m jupyter nbconvert --execute --inplace ${{ inputs.notebook }} --gpus all --accelerator cuda --devices auto
 
       - uses: peter-evans/create-pull-request@v5
         with: