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identifying multi-cellular niches #607

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giovp opened this issue Oct 7, 2022 · 1 comment
Closed

identifying multi-cellular niches #607

giovp opened this issue Oct 7, 2022 · 1 comment
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enhancement ✨ New feature or request

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@giovp
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giovp commented Oct 7, 2022

Description

Cellular neughborhood analysis:

  • obs = neighbor
  • count cell types per nighbor
    • if knn or delaunay then normalize
    • if radius than it's density and don't normalize
  • potentially perform some type of QC
  • embed

...
@giovp giovp added the enhancement ✨ New feature or request label Oct 18, 2022
@LLehner
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LLehner commented Jun 12, 2024

This and more methods to identify niches are getting implemented in PR#831. Potential methods are discussed in issue#789.

@LLehner LLehner closed this as completed Jun 12, 2024
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@giovp @LLehner