ci: build and publish at pypi/test-pypi (#95)

* ci: build and publish tp pypi and test pypi
* ci: run tests before publishing
* chore: bump to 0.2.1

.github/workflows/poetry-publish.yml

@@ -0,0 +1,67 @@
+# Workflow following resources at:
+#  - https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python#publishing-to-pypi
+#  - https://packaging.python.org/en/latest/tutorials/packaging-projects/#uploading-the-distribution-archives
+# Jobs are split to prevent unneccessary priviledge elevation through write permissions during building.
+
+name: Build and publish on Pypi
+
+on:
+  release:
+    types: [published]
+
+permissions:
+  contents: read
+
+jobs:
+  run-tests:
+    uses: ./.github/workflows/poetry-pytest.yml
+
+  release-build:
+    name: Build python wheels
+    needs:
+      - run-tests
+    runs-on: ubuntu-latest
+    steps:
+      # https://github.com/actions/checkout
+      - uses: actions/checkout@v4
+      - name: Set up Python
+      # https://github.com/actions/setup-python
+        uses: actions/setup-python@v5.1.1
+        with:
+          python-version: "3.10"
+
+      - name: Install Poetry
+        run: |
+          pip install poetry
+
+      - name: Build source and wheel archives
+        run: poetry build
+
+      - name: Upload distributions
+      # https://github.com/actions/upload-artifact
+        uses: actions/upload-artifact@v4
+        with:
+          name: release-dists
+          path: dist/
+
+  pypi-publish:
+    name: Upload release to PyPI
+    needs:
+      - release-build
+    runs-on: ubuntu-latest
+    environment:
+      name: pypi
+      url: https://pypi.org/p/modos
+    permissions:
+      id-token: write
+      # IMPORTANT: this permission is mandatory for trusted publishing
+    steps:
+    - name: Retrieve release distributions
+    # https://github.com/actions/download-artifact
+      uses: actions/download-artifact@v4.1.8
+      with:
+        name: release-dists
+        path: dist/
+    - name: Publish package distributions to PyPI
+    # https://github.com/pypa/gh-action-pypi-publish
+      uses: pypa/gh-action-pypi-publish@release/v1

.github/workflows/poetry-pytest.yml

@@ -1,6 +1,6 @@
 name: tests
 
-on: [push]
+on: [push, workflow_call]
 
 jobs:
 

.github/workflows/poetry-test-publish.yml

@@ -0,0 +1,67 @@
+# Workflow following resources at:
+#  - https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python#publishing-to-pypi
+#  - https://packaging.python.org/en/latest/tutorials/packaging-projects/#uploading-the-distribution-archives
+# Jobs are split to prevent unneccessary priviledge elevation through write permissions during building.
+
+name: Build and publish on Pypi Test
+
+on:
+  workflow_dispatch:
+
+permissions:
+  contents: read
+
+jobs:
+  run-tests:
+    uses: ./.github/workflows/poetry-pytest.yml
+  test-build:
+    name: Build python wheels
+    needs:
+      - run-tests
+    runs-on: ubuntu-latest
+    steps:
+      # https://github.com/actions/checkout
+      - uses: actions/checkout@v4
+      - name: Set up Python
+      # https://github.com/actions/setup-python
+        uses: actions/setup-python@v5.1.1
+        with:
+          python-version: "3.10"
+
+      - name: Install Poetry
+        run: |
+          pip install poetry
+
+      - name: Build source and wheel archives
+        run: poetry build
+
+      - name: Upload distributions
+      # https://github.com/actions/upload-artifact
+        uses: actions/upload-artifact@v4
+        with:
+          name: test-dists
+          path: dist/
+
+  pypi-test-publish:
+    name: Upload release to PyPI Test
+    needs:
+      - test-build
+    runs-on: ubuntu-latest
+    environment:
+      name: test-pypi
+      url: https://test.pypi.org/p/modos
+    permissions:
+      id-token: write
+      # IMPORTANT: this permission is mandatory for trusted publishing
+    steps:
+    - name: Retrieve release distributions
+    # https://github.com/actions/download-artifact
+      uses: actions/download-artifact@v4.1.8
+      with:
+        name: test-dists
+        path: dist/
+    - name: Publish package distributions to TestPyPI
+    # https://github.com/pypa/gh-action-pypi-publish
+      uses: pypa/gh-action-pypi-publish@release/v1
+      with:
+        repository-url: https://test.pypi.org/legacy/

docs/conf.py

@@ -9,7 +9,7 @@
 project = "modos-api"
 copyright = "2024, sdsc-ordes"
 author = "sdsc-ordes"
-release = "0.2.0"
+release = "0.2.1"
 
 # -- General configuration ---------------------------------------------------
 # https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "modos"
-version = "0.2.0"
+version = "0.2.1"
 description = "SMOC Multi-Omics Digital Object System API"
 authors = ["SDSC-ORDES"]
 license = "Apache-2.0"