tutorials.md

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The OpenMM Tutorials

Basic Tutorials

:::{nbgallery}

glob: True caption: Basic Tutorials

notebooks/tutorials/protein_in_water :::

Coarse-graining

:::{nbgallery}

glob: True caption: Coarse-graining

notebooks/tutorials/coarse_grained_polymer.ipynb :::

Advanced Tutorials

Tutorials showing more the more advanced capabilities. :::{nbgallery}

glob: True caption: Advanced Tutorials

notebooks/tutorials/Alchemical_free_energy_calculations.ipynb notebooks/tutorials/Beta_2_adrenergic_receptor_B2AR_membrane_protein_simulation_with_CHARMM.ipynb notebooks/tutorials/HSP90_with_ADPMg2_simulation.ipynb notebooks/tutorials/Histone_methyltransferase_simulation_with_a_multisite_water_model_TIP4P-Ew.ipynb notebooks/tutorials/Histone_methyltransferase_simulation_with_multisite_Zn2_structural_ions.ipynb notebooks/tutorials/Running_a_REST_simulation.ipynb notebooks/tutorials/umbrella_sampling.ipynb :::

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