VB013: source code

Fig. 2a

Fig. 2a: R code [MD]

RNA-Seq analysis

code:

• preprocessing: [MD]

input:

• non-normalized (raw) gene counts: [CSV]
• sample annotation: [XLSX]
• alignment QC metrics: [TSV]
• Rhesus Mmul_8 genome annoation: [GTF]

output:

• raw SeqExpressionSet: [RDA]
• normalized SeqExpressionSet: [RDA]
• pre-vaccination substracted SeqExpressionSet: [RDA]
• DGEGLM list: [RDA], [RDA]