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To fix the problem mentioned in #937 (comment), which is present on other platforms, e.g. on Debian linux:
This works as follows:
autogen.sh takes the parameter from AC_CONFIG_AUX_DIR and creates the corresnding directiry, named config/
./configure finds GAP location and populates config/ with links to the contents of GAP's cnf/ directory
Note that we set
config/
to be ignored in .gitignore