GitHub - semproj-tierversuche/pubmed-tools: Tools to download, explore, and work with PubMed records.

Download PubMed records from file

./pubmed-download.py data/pmids data/documents/

See ISSUES.md.

xsltproc -o 23367398.json pubmed2json.xsl data/documents/23367398.xml

Name		Name	Last commit message	Last commit date
Latest commit History 21 Commits
bioc		bioc
data		data
ISSUES.md		ISSUES.md
README.md		README.md
elastic-store-documents.py		elastic-store-documents.py
elastic-truncate-index.py		elastic-truncate-index.py
generate-example-json.sh		generate-example-json.sh
generate-example-results.sh		generate-example-results.sh
parse.sh		parse.sh
pubmed-download.py		pubmed-download.py
pubmed2json.xsl		pubmed2json.xsl
resultFromTSV.py		resultFromTSV.py