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ISSUES.md

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pubmed2json.xsl

  • Only the Year is being put into the "Date" value, because the other fields are optional and I haven't written XSLT for that yet.
  • An article can have multiple PublicationType entries in PubMed. The DB schema currently doesn't support this, so only the first entry is used.
  • Structured abstracts are not yet fully supported.
  • The _escape template should be applied to every string from the source XML. Also, the template should escape backslashes (\) into double-backslashes (\\).

elastic-store-documents.py

  • Blindly stores every file in data/documents/*.json in the database, without checking for duplicates, well-formedness or anything else.