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Alhena is a single cell DNA (scDNA) QC dashboard.

This wiki describes the entire stack used for the dashboard:

• Alhena react layer (https://github.com/shahcompbio/alhena)
• Alhena graphQL layer (https://github.com/shahcompbio/alhena-graphql)
• Elasticsearch DB + related loaders (https://github.com/shahcompbio/alhena-loader)

It also describes how to deploy this stack, using Docker and nginx.

Features

• Compatible with CSV output from single cell pipeline.
• Dashboards with copy number heatmap, scatterplot, violin plot, chip heatmap, and gc bias line plot
• Realtime interactivity with filters and plot linking
• Organize dashboards into views that can be assigned to particular users

Assumptions

• User access through computer (no mobile support)
• Minimum screen size is 1280 x 800

Technology

• React
  • d3
  • React Router
  • Material-UI
  • Apollo (Client)
• GraphQL
  • Apollo
• Elasticsearch
• Docker
• nginx