decatomb generates high-quality annotated contigs from viral-like particle (VLP) preperations. It currently only supports processing of Illumina data (MiSeq, NextSeq, NovaSeq should all be fine).
decatomb performs a subset of what hecatomb does. While hecatomb analyzes each individual read, decatomb focuses just on the production and analysis of contigs.
git clone https://github.com/shandley/decatomb.git
To install databases:
To be done