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Support divergent and ratio colouring, as well as inversion of colour schemes #893

Merged
merged 20 commits into from
Dec 4, 2023
Merged

Support divergent and ratio colouring, as well as inversion of colour schemes #893

merged 20 commits into from
Dec 4, 2023

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shawnlaffan
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Updates #820

@shawnlaffan
Indices: Add metadata for those that are ratios
e462c3a
@shawnlaffan
Plot ratio indices using a divergent colour scheme
ec34de7 
Legend is not yet updated.
@shawnlaffan
Grids: Plot ratio indices using divergent colours
e5bde97 
Still need to handle log scaling and min/max stretches.
@shawnlaffan
Ratio plot legends: handle >= and <= cases
56033a6
@shawnlaffan
Ratio plot legends: handle log scaling
e5aab80
@shawnlaffan
Legends: clean up CANAPE codes on change
2a62918
@shawnlaffan
Legends: avoid is_ratio false positives
6024f86
@shawnlaffan
Indices: Add divergent flag
c7b2d36
@shawnlaffan
Grids: Plot divergent indices using divergent colours
bb3b301 
Currently assumes zero as the centre,
but it would seem that is the case with
all the divergent indices.
@shawnlaffan
Dendrogram: Colour ratio and divergent indices
12db81d
@shawnlaffan
Legends: use get_colour_* methods for all modes
9c2d542
@shawnlaffan
Legends: support colour scheme inversion
06761b1
@shawnlaffan
Grid plots: Support colour scheme inversion
4de6f75
@shawnlaffan
Cluster plots: Support colour scheme inversion
af7f193
@shawnlaffan
Dendrogram plots: support colour scheme inversion
97d692c
@shawnlaffan
GUI ratio and divergent plots: red is now high
5a636e1 
This makes the colours consistent with the z-score
and p-rank plotting.
@shawnlaffan
Spatial tab dendrogram: do not add CANAPE to combo
f856026
@shawnlaffan
CI: brew fiddling on macos
8ed67f6
@shawnlaffan
GUI: invert colour stretch in spatial matrix
79a4e6a
@shawnlaffan
Rename menu entry to "Invert colour stretch"
288e035 
This makes it consistent with the other menu entries.
@shawnlaffan shawnlaffan merged commit 3de625a into master Dec 4, 2023
8 checks passed
@shawnlaffan shawnlaffan deleted the issue_820_divergent_colours branch December 4, 2023 05:12
@shawnlaffan shawnlaffan mentioned this pull request Dec 6, 2023
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@shawnlaffan shawnlaffan mentioned this pull request Jan 2, 2024
Merged
shawnlaffan added a commit that referenced this pull request Jan 2, 2024
@shawnlaffan
Merge pull request #904 from shawnlaffan/misc_legend_fixes
3283dc6 
Fixes a few issues with the Cluster and SpatialMatrix tabs that were missed in #893

Also a few other general changes.

Updates #820
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@shawnlaffan