Richness estimation 2024 #918
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Faster::Maths allows a substantial speed-up (7-30%) of arithmetic code, of which there is a lot in this module. It currently segfaults in some circumstances so lexically disable it as needed. This has been reported to its RT queue. Also avoid some looping and memory usage in the ACE and ICE variance calculations.
No need to iterate over the same sets twice.
The former is now a wrapper around the latter, the difference being which differential method is called.
Marginally faster and uses a mite less memory.
No need to pass all the args onwards when we only need four.
… args No need to pass them through calc_abc first.
This is re-used many times in the calculations
This is re-used many times in the calculations
This is re-used many times in the calculations
This is re-used many times in the calculations
Add class details and default colours to the metadata.
An empty array is expected for the bounds, rather than undef.
There is no need for the number of classes in the sub name as they are all from the same sets. It is just that some sets have less colours in total. And add all the colorbrewer qualitative palettes while we are here.
These are not used in these packages.
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Updates and optimisations for the richness estimation indices,
including displaying the metadata as categories in the GUI.
And a few other minor things.