diff --git a/CHANGELOG.md b/CHANGELOG.md index 03472ab..54306be 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,11 +1,12 @@ # Changelog -### v0.8.3 - 2022-00-00 +### v0.8.3 - 2022-08-15 +- `kmcp`: fix compling from source for ARM architectures.[#17](https://github.com/shenwei356/kmcp/issues/17) - `search`: - fix panic for paired-end reads with read2 shorter than the value of `--min-query-len`. [#10](https://github.com/shenwei356/kmcp/issues/10) - fix log. [#8](https://github.com/shenwei356/kmcp/issues/8) - - new flag `-f/--max-fpr`: maximal false positive rate of a query (default 0.05). It reduces outputting unnecessary when searching with a low minimal query coverage (-t/--min-query-cov). + - new flag `-f/--max-fpr`: maximal false positive rate of a query (default 0.05). It reduces outputting unnecessary when searching with a low minimal query coverage (`-t/--min-query-cov`). - `profile`: - recommend to use the flag `--no-amb-corr` to disable ambiguous reads correction when >= 1000 candidates are detected. - fix loging when using `--level strain` and no taxonomy given. diff --git a/docs/download.md b/docs/download.md index c46ca08..9cfc5ea 100644 --- a/docs/download.md +++ b/docs/download.md @@ -15,15 +15,25 @@ in two packages for better searching performance. ## Current Version -### [v0.8.2](https://github.com/shenwei356/kmcp/releases/tag/v0.8.2) - 2022-03-26 [![Github Releases (by Release)](https://img.shields.io/github/downloads/shenwei356/kmcp/v0.8.2/total.svg)](https://github.com/shenwei356/kmcp/releases/tag/v0.8.2) +### v0.8.3 - 2022-08-15 + +- `kmcp`: fix compling from source for ARM architectures.[#17](https://github.com/shenwei356/kmcp/issues/17) +- `search`: + - fix panic for paired-end reads with read2 shorter than the value of `--min-query-len`. [#10](https://github.com/shenwei356/kmcp/issues/10) + - fix log. [#8](https://github.com/shenwei356/kmcp/issues/8) + - new flag `-f/--max-fpr`: maximal false positive rate of a query (default 0.05). It reduces outputting unnecessary when searching with a low minimal query coverage (`-t/--min-query-cov`). +- `profile`: + - recommend to use the flag `--no-amb-corr` to disable ambiguous reads correction when >= 1000 candidates are detected. + - fix loging when using `--level strain` and no taxonomy given. + ### Links OS |Arch |File, 中国镜像 |Download Count :------|:---------|:------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -Linux |**64-bit**|[**kmcp_linux_amd64.tar.gz**](https://github.com/shenwei356/kmcp/releases/download/v0.8.2/kmcp_linux_amd64.tar.gz),
[中国镜像](http://app.shenwei.me/data/kmcp/kmcp_linux_amd64.tar.gz) |[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/kmcp/latest/kmcp_linux_amd64.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/kmcp/releases/download/v0.8.2/kmcp_linux_amd64.tar.gz) -macOS |**64-bit**|[**kmcp_darwin_amd64.tar.gz**](https://github.com/shenwei356/kmcp/releases/download/v0.8.2/kmcp_darwin_amd64.tar.gz),
[中国镜像](http://app.shenwei.me/data/kmcp/kmcp_darwin_amd64.tar.gz) |[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/kmcp/latest/kmcp_darwin_amd64.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/kmcp/releases/download/v0.8.2/kmcp_darwin_amd64.tar.gz) -Windows|**64-bit**|[**kmcp_windows_amd64.exe.tar.gz**](https://github.com/shenwei356/kmcp/releases/download/v0.8.2/kmcp_windows_amd64.exe.tar.gz),
[中国镜像](http://app.shenwei.me/data/kmcp/kmcp_windows_amd64.exe.tar.gz)|[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/kmcp/latest/kmcp_windows_amd64.exe.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/kmcp/releases/download/v0.8.2/kmcp_windows_amd64.exe.tar.gz) +Linux |**64-bit**|[**kmcp_linux_amd64.tar.gz**](https://github.com/shenwei356/kmcp/releases/download/v0.8.3/kmcp_linux_amd64.tar.gz),
[中国镜像](http://app.shenwei.me/data/kmcp/kmcp_linux_amd64.tar.gz) |[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/kmcp/latest/kmcp_linux_amd64.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/kmcp/releases/download/v0.8.3/kmcp_linux_amd64.tar.gz) +macOS |**64-bit**|[**kmcp_darwin_amd64.tar.gz**](https://github.com/shenwei356/kmcp/releases/download/v0.8.3/kmcp_darwin_amd64.tar.gz),
[中国镜像](http://app.shenwei.me/data/kmcp/kmcp_darwin_amd64.tar.gz) |[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/kmcp/latest/kmcp_darwin_amd64.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/kmcp/releases/download/v0.8.3/kmcp_darwin_amd64.tar.gz) +Windows|**64-bit**|[**kmcp_windows_amd64.exe.tar.gz**](https://github.com/shenwei356/kmcp/releases/download/v0.8.3/kmcp_windows_amd64.exe.tar.gz),
[中国镜像](http://app.shenwei.me/data/kmcp/kmcp_windows_amd64.exe.tar.gz)|[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/kmcp/latest/kmcp_windows_amd64.exe.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/kmcp/releases/download/v0.8.3/kmcp_windows_amd64.exe.tar.gz) *Notes:* @@ -60,9 +70,9 @@ And then: 1. [Install go](https://go.dev/doc/install) - wget https://go.dev/dl/go1.17.11.linux-amd64.tar.gz + wget https://go.dev/dl/go1.17.13.linux-amd64.tar.gz - tar -zxf go1.17.11.linux-amd64.tar.gz -C $HOME/ + tar -zxf go1.17.13.linux-amd64.tar.gz -C $HOME/ # or # echo "export PATH=$PATH:$HOME/go/bin" >> ~/.bashrc diff --git a/docs/usage.md b/docs/usage.md index 7233ca0..0bbb2ae 100644 --- a/docs/usage.md +++ b/docs/usage.md @@ -7,7 +7,7 @@ KMCP is a command-line tool consisting of several subcommands. ```text Program: kmcp (K-mer-based Metagenomic Classification and Profiling) - Version: v0.8.2 + Version: v0.8.3 Documents: https://bioinf.shenwei.me/kmcp Source code: https://github.com/shenwei356/kmcp diff --git a/kmcp/cmd/version.go b/kmcp/cmd/version.go index 419a345..1994a4d 100644 --- a/kmcp/cmd/version.go +++ b/kmcp/cmd/version.go @@ -30,7 +30,7 @@ import ( ) // VERSION is the version -var VERSION = "0.8.3-alpha2" +var VERSION = "0.8.3" // versionCmd represents the version command var versionCmd = &cobra.Command{