documentation test

shitohana · Oct 2, 2023 · d06c363 · d06c363
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Showing 22 changed files with 151 additions and 1,507 deletions.
diff --git a/.idea/.gitignore b/.idea/.gitignore
diff --git a/.idea/BismarkPlot.iml b/.idea/BismarkPlot.iml
diff --git a/.idea/dbnavigator.xml b/.idea/dbnavigator.xml
diff --git a/.idea/inspectionProfiles/Project_Default.xml b/.idea/inspectionProfiles/Project_Default.xml
diff --git a/.idea/inspectionProfiles/profiles_settings.xml b/.idea/inspectionProfiles/profiles_settings.xml
diff --git a/.idea/misc.xml b/.idea/misc.xml
diff --git a/.idea/modules.xml b/.idea/modules.xml
diff --git a/.idea/vcs.xml b/.idea/vcs.xml
diff --git a/docs/conf.py b/docs/conf.py
@@ -1,7 +1,7 @@
 project = 'BismarkPlot'
 copyright = '2023, shitohana'
 author = 'shitohana'
-release = '1.0'
+release = '1.2'
 import os
 import sys
 sys.path.insert(0, os.path.abspath('../src'))
@@ -15,7 +15,7 @@
 ]
 
 templates_path = ['_templates']
-autodoc_mock_imports = ['polars', 'matplotlib', 'numpy', 'scipy', 'pandas']
+autodoc_mock_imports = ['polars', 'matplotlib', 'numpy', 'scipy', 'pandas', 'pyarrow']
 autodoc_default_options = {
     'members': True,
     'exclude-members': '__init__'

diff --git a/docs/index.rst b/docs/index.rst
@@ -8,11 +8,4 @@ This page gives an overview of all public objects, functions and methods.
    :toctree: _autosummary
    :template: module.rst
 
-    bismarkplot.Bismark
-    bismarkplot.BismarkFiles
-    bismarkplot.read_bismark
-    bismarkplot.read_genome
-    bismarkplot.LinePlot
-    bismarkplot.HeatMap
-    bismarkplot.BoxPlot
-    bismarkplot.BarPlot
+    bismarkplot.BismarkPlot
diff --git a/pyproject.toml b/pyproject.toml
@@ -37,4 +37,4 @@ Documentation = "https://shitohana.github.io/BismarkPlot/"
 exclude = ["/venv", "/dist", "/test"]
 
 [project.scripts]
-bismarkplot = "bismarkplot.__main__:main"
+bismarkplot = "bismarkplot.main:main"
diff --git a/src/bismarkplot/BarPlot.py b/src/bismarkplot/BarPlot.py
diff --git a/src/bismarkplot/Bismark.py b/src/bismarkplot/Bismark.py