Merge remote-tracking branch 'origin/master'

# Conflicts: # README.md
shitohana · Nov 2, 2023 · d1e6cf9 · d1e6cf9
2 parents 3f3b281 + 35177f7
commit d1e6cf9
Showing 1 changed file with 5 additions and 16 deletions.
diff --git a/README.md b/README.md
@@ -164,10 +164,7 @@ lp.draw()
 
 Output for _Brachypodium distachyon_:
 
-<p align="middle">
-    <img src="https://user-images.githubusercontent.com/43905117/280023042-849599c1-4b36-47e2-8b8f-6c9b9389b48e.png" width="300">
-</p>
-
+<img src="https://user-images.githubusercontent.com/43905117/280023042-849599c1-4b36-47e2-8b8f-6c9b9389b48e.png">
 
 **Confidence bands** can be visualized via setting the `confidence` parameter in `LinePlot.draw()`
 
@@ -177,22 +174,14 @@ lp.draw(confidence=.95)
 
 Output for _Brachypodium distachyon_: 
 
-<p align="middle">
-    <img src="https://user-images.githubusercontent.com/43905117/280023017-e1167a90-83d7-46d5-aa45-545d6bdbc033.png" width="300">
-</p>
+<img src="https://user-images.githubusercontent.com/43905117/280023017-e1167a90-83d7-46d5-aa45-545d6bdbc033.png">
 
 ### Heat-map clusterisation
 
 Genes can be clustered to minimize distances between them before plotting heat-map. This can be useful for capturing 
 overall methylation patterns in sample. _This operation is very time consuming. It is advised to set small number of
 windows (< 50)_.
 
-Output for _Brachypodium distachyon_
-
-<p align="middle">
-    <img src="https://user-images.githubusercontent.com/43905117/280022981-d6d4ffff-7f3d-4e33-8e42-05b98ca28161.png" width="300">
-</p>
-
 ```python
 metagene = bismarkplot.Metagene.from_file(
     file = "path/to/CX_report.txt",
@@ -208,9 +197,9 @@ clustered = metagene.clustering(
 # Heatmap with optimized distances between genes will be drawn
 clustered.draw().savefig("path/to/clustered_hm.pdf")
 ```
+Output for _Brachypodium distachyon_
 
-Output:
-
+<img src="https://user-images.githubusercontent.com/43905117/280022981-d6d4ffff-7f3d-4e33-8e42-05b98ca28161.png">
 
 ### Smoothing the line plot
 
@@ -366,4 +355,4 @@ Output for _Arabidopsis thaliana_:
 
 Output for _Brachypodium distachyon_:
 
-<img src="https://user-images.githubusercontent.com/43905117/274563210-4f5dc20a-4ab3-4e52-8263-6ebe7b0623d5.png">
+<img src="https://user-images.githubusercontent.com/43905117/274563210-4f5dc20a-4ab3-4e52-8263-6ebe7b0623d5.png">