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setup.py
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setup.py
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from setuptools import setup, find_packages
from codecs import open
from os import path
here = path.abspath(path.dirname(__file__))
version = open("raccoon/_version.py").readlines()[-1].split()[-1].strip("\"'")
with open(path.join(here, 'README.md'), encoding='utf-8') as f:
long_description = f.read()
setup(
name='raccoon-cluster',
version=version,
description='Scale-adaptive clustering in Python',
long_description=long_description,
url='https://github.com/shlienlab/raccoon',
download_url = 'https://github.com/shlienlab/raccoon/archive/'+version+'.tar.gz',
author='Federico Comitani',
author_email='federico.comitani@gmail.com',
license='GPL-3.0',
classifiers=[
'Development Status :: 4 - Beta',
'Intended Audience :: Science/Research',
'Topic :: Scientific/Engineering',
'License :: OSI Approved :: GNU General Public License v3 (GPLv3)',
'Programming Language :: Python',
'Programming Language :: Python :: 3.7',
'Programming Language :: Python :: 3.8'
],
keywords=['clustering','optimization','dimensionality-reduction',
'differential-evolution','knn','umap','hierarchical-clustering',
'multi-scale','scale-adaptive','optimal-clusters'],
packages=find_packages(exclude=['contrib', 'docs', 'tests']),
install_requires=['numpy>=1.19.5',
'pandas>=1.1.3',
'scikit-learn>=0.22.2.post1',
'scikit-network==0.20.0',
'numba>=0.52.0',
'umap-learn>=0.3.9',
'optuna>=2.10.0',
'psutil>=5.7.3',
'anytree>=2.8.0',
'matplotlib>=3.3.3',
'seaborn>=0.11.0'],
extras_require={ 'gpu': ['cupy==8.60',
'cuml==0.18',
'cudf==0.18',
'cugraph==0.18'],
'hdbscan': ['hdbscan']},
zip_safe=False,
)