Click the green code button.
Download Zip.
Open the app.R file in RStudio.
Then in RStudio, click Run App button.
Click Open in Browser.
https://slfan.shinyapps.io/ShinySERRF/
Follow the example dataset.
It requries batch, sampleType, time, label for samples, and No for compounds.
batch tells SERRF which samples/qcs belongs to one batch, e.g. machine, running period.
sampleType requires qc, sample. It can also take other validate samples, e.g. validate.
Note, if you have blank samples which are suggested not to be normalized, leave it empty cells. Any sample that you do not want to be normalized should be left empty.
time is the processing order. It can be real time values, or simply integer indicating the processing order of the samples/qcs.
label is the sample labels (row #4) and compound labels (column B).
No is the compound index.
slfan at ucdavis at edu